Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1553 ATGGAGAGTGATGATATTTGCATGGATGTGCTTTCTCGATTGCCTACCAAGACTTTGCTTGGCTTGAAGTGTGTCTGTAAGAGGTGGCGCCGCATTATCTCTGACCGCTCTTTCATTCAAGATCTGTTACAAAGACCAGAACCACTCGCAGGGTTCTTCTTCCAAGAGAGGTACCAATGGTGTGATGAAGATATCAGCACTATTAGCTATATTCCAGCCACAATGGAAGGTACCCAAGTGCAGCAAACCATCTTTAGTTTCCTCCCTGAGGATGTTGTCATCTTGGGATCGTGCAATGGCTTGGTTTGTTGTCGGAGTGTCTTCCCTTCCCCAGATCCCTCCATCTTTGTATGCAACCCCTCCAACAAGCAATGGATCAGACTGCTAGAAACTACTCCTGACAAAGAAAGCAGTTACGGTTTGGCATTCAATCCATTTCAAAGTCCTATAGACATGCCTACAAATTTCAAAGTGGTCAGGGTTAGTCAAGCCCAAACTGATATGGATGATGATTCATACTTCTCATTTGAAATATACTCTTCACAAGCAGGGGCATGGAAGAAATCGAAGGAGATCTGCCAGTGCAACCACAATTTATTCAAGAACAAAGGCATTTTTGTTGGAGGGATCTTGCATTGGCTGACTGATGGTGACCAAGTCCTTTCATTTAACATAGAAAATGAGTTATCATGGTTGATTTCAGCACCATTCCCCACTATACACTTAACTGCCATCCCTGAGATGTGCATTGGAGAGTCTAGAGGTCGATTGCATTACATCATGATCTCTGAAGATGGACTTCAAGTATGGGCTCTCGAGGATTATTACGATTCAAATTGGTCACTTGTCCACTCAACAACTCTAGAGGTGATGGAGGAAGAAAACTCACAGTTGCTCTACAATACTCGTGATAGAGTGGCACAAAGGATTAGCATTGATTCAATCCCATGGATGGATCCTTTGGCCTTTAAGGATGGTCTTTTACTGATGAGGGTATCGACAAAGATAATCTTGTACTGCATCGGGACGAGGAAGATGGAGGAACTGTGTAACCTTTCCAAGCTGGGGAGAAACTCCATCTTTGGCCCTTTGGTGATTCCATACTCTTTGAACTTGGCTCCGCTGAGTCAGACATAG 1137 0.4389 MESDDICMDVLSRLPTKTLLGLKCVCKRWRRIISDRSFIQDLLQRPEPLAGFFFQERYQWCDEDISTISYIPATMEGTQVQQTIFSFLPEDVVILGSCNGLVCCRSVFPSPDPSIFVCNPSNKQWIRLLETTPDKESSYGLAFNPFQSPIDMPTNFKVVRVSQAQTDMDDDSYFSFEIYSSQAGAWKKSKEICQCNHNLFKNKGIFVGGILHWLTDGDQVLSFNIENELSWLISAPFPTIHLTAIPEMCIGESRGRLHYIMISEDGLQVWALEDYYDSNWSLVHSTTLEVMEEENSQLLYNTRDRVAQRISIDSIPWMDPLAFKDGLLLMRVSTKIILYCIGTRKMEELCNLSKLGRNSIFGPLVIPYSLNLAPLSQT* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1553 378 SUPERFAMILY F-box domain 4 125 IPR036047 GO:0005515
Vvi4g1553 378 CDD F-box_AtFBW1-like 4 38 - -
Vvi4g1553 378 ProSiteProfiles F-box domain profile. 1 42 IPR001810 GO:0005515
Vvi4g1553 378 Gene3D - 3 42 - -
Vvi4g1553 378 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATED 3 301 - -
Vvi4g1553 378 SMART fbox_2 2 42 IPR001810 GO:0005515
Vvi4g1553 378 NCBIfam F-box protein interaction domain 97 290 IPR017451 -
Vvi4g1553 378 Pfam F-box domain 3 37 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1553 Vvi-Chr4 23591105 23592241 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1553 - - vvi:100258433 780.015