Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1005 ATGTCAATTATCACGTCCCAATACTATGTTTACCATGATTTTGTGAAGATGGATTTCCTAGCTTCTCTTTCACCGCACAGCTGCATCAAACCTAATGCCAGACCAAACACATACTGCATTTGCAAGCTTAGCTTTTTGAGATTTTTTAGTAAAGCTAATTTTTATTGCACTGAATTTATGCAGATGAGCATGGCCCTTAGCCTTAAAAAAGACTGGAAACCGATATGCGACATAAAGTTCTCAAGTCCTCCAACTGAATTGCCACAAGAATTGAATATAGATTCAATTGTTAAAAAGAAAAAGCTAGCTGATATTTCTGCATTGCCGCAGTTTTCAGTAGCACCTGCTCCAAACTCTTCACGTGACAGGAATGAGTGGGGAAAGTTTCTGAATTTCCTGCACAGATATGATATGGTTGCTATTACAGGCTTTGAGCAGTACAAGTTTTACATTTTACCTCCTCCTATAGTATCTATATCAAGCACAGTTAATATTGCATATCAAATAGGCAGTATATGTACTCGTCCAAGAGATTGTTCACACTTAGCTGAGGAACGGGGTGGACACGATACTATCATGGCAAGAGGTCCATCGAATGGTGGAGATGTCAGCTCTTCACGTCCTAAGTTCCCTCCCGAGGAAGATCTTGCAAATCATTTTACATCTGAAACTTGTGGCGGAAGTCAATCACGTGTGATGCAGGATAGACTGCACGGGAAAAATTCTGTAAAAATAGACCAAAGTTACTTGAAAACACTTGGCCAGGCTCACTCTGGATGGATTTTTGGTGGAATAGCTGAGCTTGTTGATAATTCGAGTGATGCCAAAGCAACTAAGATGGATATTTTTGTTGAAATGATAAAGTTGAAAAAGTCTGGGAAGGATGTACCTATGCTGTCAGTAATTGATGATGGTCAAGGGATGAACCATGAAGAGGTTATAAAAATGGTATCTCTCGGGCACAAACAATCTGGTTATGATGATAAGGATCAAATTGGTAGATTCGGTGTTGGATTCAAGACAGGAGCAATGAGGCTGGGCAGAGATGTTCTTGTTTTAACCCAGACTGCTAATTCCAGATCTATAGCTTTTCTTTCACAATCGCTGAATGAAGGCAAGGATAATATAGAGATTCCGATAGTTAGTTACTGCCGGCAAGGACAACAAATGGAAGTTGACCCATCTGCCCAGTCTGAGAGTTTAGCCAAATTCAATTTGAAAGCTATTCAAGATAACTCACCGTTTAATAAATATCTTATCGGCGAAAAGGCAGCCCTGTTTTGTGGTGGTACGGGAACCCAAATATATATATGGAACTTGGATGAATGGGGTTCAGAGTGTTGCCTAGAGTGGCATGACGGATTGAAAGGTGGGAGTTCTTTTCACCAAGGTGACATTTTCATCCGCAGCAAGAGGAGTCGTGCTCGTCTAGGCCAACTTAATCAAAAGGTTCCTCTGGATTACTCATTACGAGCTTATTTGGAAGTCATCTTCTTAGTTCCACGAATGAAGATATCTGTTCAAAGGAAACTGGTTAAAAGTCGACCACTAGCAAATTTCCTCACTAATACTATTATTGCAACTGGTGACATCTTGGGAAGGGCAGTTGAATTGATTTTAGGATTTAGTCAATTAGAATGGGATCAAGCAAGCTGTGGAGTATTTTTGTATTGGCATGGTCGCCTAATTGAGGCTTACAAGAGAGTTGGTGGCATGATTCATAGTGCAGATGTGGGCCGGGGTGTAATTGGTGTCATGGATGTGACCAATTTAATGGATGATCAGGATGGTCGTGTGTGGGTGCACAATAACAAGCAGGGATTCCAAGACTGTGAAACATATGCATGTCTTGAGCAGTGGCTTGGGAAAAAAGCAGATGAATACTGGGACAATAATTTTGATTCACTTAGTTTGGACAATGAGGACAACTGTGTCTACAAACCAGATTGTGAGTGGGTGCAATGTGACAAATGCAGAAAGTGGAGAATGTTACCTCCCACCTTTGACAACCGAGAGTTGCCTATGCAATGGTTCTGTTATATGGAGCCTTTCAAAGGTAAATGTGCAGACGCTGAACAGAAGGTGAAGCCTGGCATAGTCGCTGTTTCCACGAAGCGATCAGGATATGATTGCATGCTGAAAGGTTCTCGTAGTATCAAGATGGAACCTGATGCTGATGTTTCTGGAACAGATGACAAATTCGTCAATTCTGAGGATGTACAACATCCAACCTTGAAGCGGTTGAAAAAGGGACTTCCAAGACACGAAGATGCCAAATCTCCGTCCTTAAACAAATCAAAAAAGAGATAA 2310 0.4113 MSIITSQYYVYHDFVKMDFLASLSPHSCIKPNARPNTYCICKLSFLRFFSKANFYCTEFMQMSMALSLKKDWKPICDIKFSSPPTELPQELNIDSIVKKKKLADISALPQFSVAPAPNSSRDRNEWGKFLNFLHRYDMVAITGFEQYKFYILPPPIVSISSTVNIAYQIGSICTRPRDCSHLAEERGGHDTIMARGPSNGGDVSSSRPKFPPEEDLANHFTSETCGGSQSRVMQDRLHGKNSVKIDQSYLKTLGQAHSGWIFGGIAELVDNSSDAKATKMDIFVEMIKLKKSGKDVPMLSVIDDGQGMNHEEVIKMVSLGHKQSGYDDKDQIGRFGVGFKTGAMRLGRDVLVLTQTANSRSIAFLSQSLNEGKDNIEIPIVSYCRQGQQMEVDPSAQSESLAKFNLKAIQDNSPFNKYLIGEKAALFCGGTGTQIYIWNLDEWGSECCLEWHDGLKGGSSFHQGDIFIRSKRSRARLGQLNQKVPLDYSLRAYLEVIFLVPRMKISVQRKLVKSRPLANFLTNTIIATGDILGRAVELILGFSQLEWDQASCGVFLYWHGRLIEAYKRVGGMIHSADVGRGVIGVMDVTNLMDDQDGRVWVHNNKQGFQDCETYACLEQWLGKKADEYWDNNFDSLSLDNEDNCVYKPDCEWVQCDKCRKWRMLPPTFDNRELPMQWFCYMEPFKGKCADAEQKVKPGIVAVSTKRSGYDCMLKGSRSIKMEPDADVSGTDDKFVNSEDVQHPTLKRLKKGLPRHEDAKSPSLNKSKKR* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1005 769 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 265 383 - -
Mtr5g1005 769 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 62 755 IPR045261 GO:0016887
Mtr5g1005 769 MobiDBLite consensus disorder prediction 722 763 - -
Mtr5g1005 769 MobiDBLite consensus disorder prediction 190 209 - -
Mtr5g1005 769 Gene3D - 637 696 - -
Mtr5g1005 769 Gene3D - 253 409 IPR036890 -
Mtr5g1005 769 ProSiteProfiles Zinc finger CW-type profile. 646 696 IPR011124 GO:0008270
Mtr5g1005 769 Pfam Morc6 ribosomal protein S5 domain 2-like 488 629 IPR041006 -
Mtr5g1005 769 Pfam CW-type Zinc Finger 651 693 IPR011124 GO:0008270
Mtr5g1005 769 PANTHER OS06G0622000 PROTEIN 62 755 - -
Mtr5g1005 769 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 252 393 IPR036890 -
Mtr5g1005 769 MobiDBLite consensus disorder prediction 722 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1005 Mtr-Chr5 10017608 10031657 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1005 - - cam:101494973 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1005 5 10017608 10031657 Mtr5g1005 5 10017608 10031657 ECH