Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1547 ATGGCTTTAGGAAAATATAGTAGAGTCGATGGTAGGAGATCGACCACCAATTATTGTTCTACAGCAACTCTGGTTGCTTTTGTGGCTCTTTGCTTGGTTGGGGTTTGGATGATGACATCCTCATCTGTCGTTCCGGTTCAAAATTCAGATGTCTCAACTCAGGAGACCAAAGATGAGGTGAAGCAACAAGTGGTTGAAAGTAATGATAGTGATACTAGGCAATTTGAGGATAGTTCCGGTGATCTAACAGATGATGCAAAGAAGGGGGATGGTGTGAGTTTCACTCAGGATGAAAAAAACCCTAATCCCCAAGATAATCCGGCTGTTCCTGAGAAACCATCGGAAAATGGTCTGGAGGAAAAACAGGAGAAGCCAGAAGAGAAACTCATTAATGAGGAAGAAAATAAGCCAGAAGATGGGTCAACAAATGAGGCAGAAAACGGGGAAAACAAATCTGGGGATGGGGAAGGAGATTCTAAGACAGAAGATGCAAATTCAGATTCAGGAGAGACAAAAACAGATGGTGGTGAAAGTATTGCAGATGGACAGGGTGATTCTGAAGGGGGTTCGGTTGAGAAGAAATCTGAGTTGGATGACAGTGAGAAGAAATCAGAGGAGAACTCCTTTGAAACTAAGGATGGAGACAAAGTGGATGGTCAGATAGAGGAGAAGGTGGAGCAAAATGAGAATAAAGATTCTGAGCAAAATTCAGGTGAGAGGAAGGAGGATAGTGAGGCCAAAGAACAGGTTTCAAATGAGGTATTTCCTTCTGGGGCTATGTCAGAGCTCCTGAATGAAACTACCACTCAAAATGGAGCGTTCTTGACTCAGGCAGCAGAGTCTAAGAAGGAAAAAGAAAGCCAACAGACTGTCTACAGTTGGAAAGTTTGCAATGTCACTGCTGGACCAGATTACATCCCATGCCTTGACAATTTGCAAGCAATTAAGAGCCTCCCAAGTACCAAGCATTATGAACACCGAGAGAGGCACTGCCCTAATGAACCACCCACCTGTCTTGTTTCACTTCCTGAAGGATACAAACGTCCAATTGAGTGGCCGACAAGCAGGGATAAGATATGGTACTATAACGTTCCCCACACCAAGCTTGCAGAAATTAAAGGGCATCAGAATTGGGTGAAGGTTTCTGGCGAGTTCCTTACTTTTCCTGGTGGTGGAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAGTCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTTGGATGTGGTGTTGCTAGCTTTGGAGGCTATCTTTTTGATAAAGATGTGCTCACTATGTCATTTGCCCCAAAAGACGAGCATGAAGCCCAAGTACAATTTGCACTTGAAAGGGGAATTCCGGGTATATCTGCTGTTATGGGCACAAAGAGACTTCCCTTCCCAGCCATGGTCTTTGATGTTGTCCACTGTGCACGTTGTAGAGTTCCCTGGCATATAGAAGGTGGTAAACTTCTCTTGGAGCTGAACCGTGTGTTGCGGCCTGGTGGTTTCTTTGTGTGGTCGGCAACTCCGGTTTACCAGAAGCTTGCTGATGATGTTGCGATATGGAATGCCATGACTGAACTGATGAAGTCAATGTGCTGGGAGCTTGTGGTGATTAAAAGGGATGTGGTGAATCGTGTGGCAGCAGCAATATATAAGAAGCCTACTTCTAATGATTGCTATGAGAAAAGATCGCAAAATGAACCTCCAATCTGTGCCGATTCAGAAGATGCAAATGCTGCCTGGAATGTCCCATTGCAAGCATGTATGCACAAAGTGCCAGTTGATGCATCGAAACGCGGCTCTCAATGGCCAGAGCTATGGCCTGCAAGGTTGGATAAAAGTCCATACTGGTTGACAAGTTCCCAGGTTGGGGTTTATGGCAGAGCAGCACCGGAGGATTTCACTGCAGACTATGAACACTGGAAACGAGTGGTTGCTCAGTCATATCTAAATGGGATAGGAATCAGCTGGTCTTCTGTGAGAAATGTCATGGACATGAGAGCTGTCTACGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATGTTTGGGTCATGAATGTGGTCTCAATAGACTCTCCAGATACACTTCCTATAATTTATGAACGAGGTCTATTTGGGATTTATCACAATTGGTGTGAATCATTCAACACCTACCCTAGATCATACGATCTGTTACATGCAGACCATATCTTCTCCAAGACCAAAAAGAAGTGCAACCTGGTGGCTGTGATTGCAGAGGCTGATCGGATTCTAAGGCCTGAAGGAAAGCTTATTGTCCGTGATGATGTGGAGACACTTGGTCAGGTGGAGAACATGCTTAGGTCCATGCACTGGGAAATCCGGATGACTTACTCCAAGGAGAAGGAGGGATTGCTATGTGCCCAGAAAACCATGTGGAGGCCTAAAGAGATGGAGATAATAAAGTCGGCTATTGCTTAA 2478 0.4479 MALGKYSRVDGRRSTTNYCSTATLVAFVALCLVGVWMMTSSSVVPVQNSDVSTQETKDEVKQQVVESNDSDTRQFEDSSGDLTDDAKKGDGVSFTQDEKNPNPQDNPAVPEKPSENGLEEKQEKPEEKLINEEENKPEDGSTNEAENGENKSGDGEGDSKTEDANSDSGETKTDGGESIADGQGDSEGGSVEKKSELDDSEKKSEENSFETKDGDKVDGQIEEKVEQNENKDSEQNSGERKEDSEAKEQVSNEVFPSGAMSELLNETTTQNGAFLTQAAESKKEKESQQTVYSWKVCNVTAGPDYIPCLDNLQAIKSLPSTKHYEHRERHCPNEPPTCLVSLPEGYKRPIEWPTSRDKIWYYNVPHTKLAEIKGHQNWVKVSGEFLTFPGGGTQFKNGALHYIEFIEESMPDIAWGKRSRVVLDVGCGVASFGGYLFDKDVLTMSFAPKDEHEAQVQFALERGIPGISAVMGTKRLPFPAMVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKLADDVAIWNAMTELMKSMCWELVVIKRDVVNRVAAAIYKKPTSNDCYEKRSQNEPPICADSEDANAAWNVPLQACMHKVPVDASKRGSQWPELWPARLDKSPYWLTSSQVGVYGRAAPEDFTADYEHWKRVVAQSYLNGIGISWSSVRNVMDMRAVYGGFAAALRDLNVWVMNVVSIDSPDTLPIIYERGLFGIYHNWCESFNTYPRSYDLLHADHIFSKTKKKCNLVAVIAEADRILRPEGKLIVRDDVETLGQVENMLRSMHWEIRMTYSKEKEGLLCAQKTMWRPKEMEIIKSAIA* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1547 825 CDD AdoMet_MTases 422 517 - -
Vvi4g1547 825 MobiDBLite consensus disorder prediction 54 94 - -
Vvi4g1547 825 MobiDBLite consensus disorder prediction 45 256 - -
Vvi4g1547 825 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 328 570 IPR029063 -
Vvi4g1547 825 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 24 813 IPR004159 GO:0008168
Vvi4g1547 825 MobiDBLite consensus disorder prediction 187 249 - -
Vvi4g1547 825 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 659 792 IPR029063 -
Vvi4g1547 825 Gene3D Vaccinia Virus protein VP39 394 578 IPR029063 -
Vvi4g1547 825 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 304 809 IPR004159 GO:0008168
Vvi4g1547 825 MobiDBLite consensus disorder prediction 114 170 - -
Vvi4g1547 825 FunFam probable methyltransferase PMT23 394 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1547 Vvi-Chr4 23402262 23408794 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1547 - - vvi:100260142 1649.03