Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01839 ATGGCTTTAGGGAAATATACTAGAGTAGATGGTAGAAGATCATCGAGTTGGTGTTCCACGGTGACTGTTGTCGTGTTTGTGGCGCTGTGCTTGGTTGGCGTTTGGATGATGACATCATCTTCAGTTGTCCCTGTGCATAACGGAGACGAGGCTCACGAGACCAAGAATGAAGTGAGGGAACAAACGGATATTAAAGAAGAGGCTGCCAACGAGGTCGGCAATAGCAATACTAGGCAGTTTGAAGATAATCAGGGTGATTTGCCTGAGGATGCAACCAAAGGAGATATCAATGTATCCTCTGAAGACAATTCTAACTTGTCAGAAAAACAAGATGAGAAATTGGAGGAAAATCCTGTAGAAAGGTCTTCTGAAGACATAAAGACGGAAGATAAGTCTTCCGAAGTCACAACAACGGAAAAGGATAGTAAAACCGATGATGAAGGTTCCAATACAGAAAATGAATCAAACTCAGACTCTGCTGAAAATAACGAAGACAGTGACGAGACTTCCACTAAGGATTCTGAGTCTAATGAGAGTGAAAATAAATTTGAATCAGATGATAACAAGAAGTCTGATACAGATGAGAGTGAGAAGCAGCAATCTGATAACTCTGACGAGACAACAGATAGTAGGATAGAGGAGAAGGTGGAAGAAAGTGATAACAAAGAATCTGATGAAAACTCTAGTTTGAAGAATACAAATGATAATACTAAACAGCAGAGTTCAAATGAGGTATTCCCTTCTGGGGCTCAGTCAGAGCTTCAGGATGAAAGTACGACAGAAACTGGGTCTTGGTCAACTCAGGCAGCGGAGTCTAAGAATGAAAAGGAGTCTCAAGAATCCTCCAAGCCAACTGGATACAATTGGAAGCTTTGCAATGTCTCTGCTGGTCCAGATTTTATCCCATGCCTTGACAACTGGAAAGCTATTAGGAGTCTCCGAAGTACTAAGCACTATGAACATCGAGAGAGGCACTGTCCAGAGGAGCCTCCTACCTGCGTTGTTCCTGTTCCCGATGGATATAAACGCCCAATTGAGTGGCCTAGAAGCAGAGAGAAGATATGGTATCACAATGTTCCACACACCAAGCTTGCTCAAGTTAAGGGTCACCAGAATTGGGTGAAAGTTACTGGGGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTTAAACACGGGGCACTTCATTATATTGACTTCATACAAGAGACTGTACCAGACATTGCTTGGGGCAAACGCACGCGAGTTATACTGGATGTTGGATGTGGTGTAGCCAGCTTCGGAGGTTTTCTTTTTGAAAGAGATGTACTGGCAATGTCATTAGCTCCCAAGGATGAACATGAAGCTCAGGTACAATTCGCACTTGAACGTGGGATTCCTGCTATATCTGCTGTGATGGGTACAAAGAGGCTTCCCTTCCCTGGGAAAGTATTTGATGTAGTCCATTGTGCACGATGTAGAGTTCCGTGGCATATAGAAGGTGGTAAACTTCTTTTGGAGCTGAATAGAGTATTGCGACCTGGTGGCTTTTTTGTATGGTCCGCTACTCCTATCTATCAGAAGCTCCCTGAAGATGTTGAAATATGGAATGCCATGAAGGCACTTACAAAAGCAATATGCTGGGAACTTGTTTCAATCAGCAAGGATCAAGTAAATGGAGTAGGTGTAGCTGTATACAAGAAGCCAAGTTCTAATGAGTGTTACGAGCAACGTTCAAAAAATCAGCCACCGCTGTGTCCAGACTCTGATGATCCTAATGCAGCATGGAACGTTAAATTGCAAGCTTGCATACACAAAGCGCCAGAGAGTTCGACGGAACGAGGATCAAAATTGCCAGCGAAGTGGCCAGCCAGACTGACCAAAGTTCCTTATTGGTTGTTGAGTTCCCAAGTTGGAGTTTATGGAAAGCCAGCGCCTGAAGATTTCACTTCTGATTATGAACACTGGAAACGCGTAGTGTCTAAGTCTTATCTAAATGGCTTGGGAATTCAATGGTCCAATATTCGCAATGTCATGGATATGAGATCTATCTATGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATGTTTGGGTCATGAATGTGGTTTCAATAGACTCTCCAGACACCCTTCCAATTATTTATGAACGAGGTCTTTTCGGTATATATCATGATTGGTGTGAATCATTTAGCACCTATCCTAGAACCTACGATCTCCTCCATGCCGATCATCTGTTTTCAAATCTTAAGAAAAGGTGCAATTTGGCTGCTGTAGTGGCTGAGGCTGATCGGATTCTTAGGCCGGAAGGAAAACTTATTGTTCGTGACAGTGTTGAGATCATAGAAGAGCTGGAGAGCATGGTAAGGTCTCTGCAGTGGAAGGTTCGCATGACTTACTCCAAGGATAAGGAGGGCTTGTTATGCGTGCAGAAGTCTATGTGGCGACCAAAGGAACAGGAGAAACTCGAGTATGCTATCATTTAA 2463 0.4336 MALGKYTRVDGRRSSSWCSTVTVVVFVALCLVGVWMMTSSSVVPVHNGDEAHETKNEVREQTDIKEEAANEVGNSNTRQFEDNQGDLPEDATKGDINVSSEDNSNLSEKQDEKLEENPVERSSEDIKTEDKSSEVTTTEKDSKTDDEGSNTENESNSDSAENNEDSDETSTKDSESNESENKFESDDNKKSDTDESEKQQSDNSDETTDSRIEEKVEESDNKESDENSSLKNTNDNTKQQSSNEVFPSGAQSELQDESTTETGSWSTQAAESKNEKESQESSKPTGYNWKLCNVSAGPDFIPCLDNWKAIRSLRSTKHYEHRERHCPEEPPTCVVPVPDGYKRPIEWPRSREKIWYHNVPHTKLAQVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETVPDIAWGKRTRVILDVGCGVASFGGFLFERDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWNAMKALTKAICWELVSISKDQVNGVGVAVYKKPSSNECYEQRSKNQPPLCPDSDDPNAAWNVKLQACIHKAPESSTERGSKLPAKWPARLTKVPYWLLSSQVGVYGKPAPEDFTSDYEHWKRVVSKSYLNGLGIQWSNIRNVMDMRSIYGGFAAALRDLNVWVMNVVSIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSNLKKRCNLAAVVAEADRILRPEGKLIVRDSVEIIEELESMVRSLQWKVRMTYSKDKEGLLCVQKSMWRPKEQEKLEYAII 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01839 820 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 299 804 IPR004159 GO:0008168
Vimu10g01839 820 MobiDBLite consensus disorder prediction 67 288 - -
Vimu10g01839 820 MobiDBLite consensus disorder prediction 105 150 - -
Vimu10g01839 820 FunFam probable methyltransferase PMT23 389 573 - -
Vimu10g01839 820 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 632 800 IPR029063 -
Vimu10g01839 820 MobiDBLite consensus disorder prediction 230 272 - -
Vimu10g01839 820 Gene3D Vaccinia Virus protein VP39 394 591 IPR029063 -
Vimu10g01839 820 Coils Coil 51 71 - -
Vimu10g01839 820 CDD AdoMet_MTases 417 512 - -
Vimu10g01839 820 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 322 566 IPR029063 -
Vimu10g01839 820 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 21 808 IPR004159 GO:0008168
Vimu10g01839 820 MobiDBLite consensus disorder prediction 165 229 - -
Vimu10g01839 820 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01839 Vimu-Chr10 26168263 26172512 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01839 - - gmx:100777586 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01839 10 26168263 26172512 Vimu10g01839 10 26168263 26172512 ECH