Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1545 ATGGACTCGAGTGCCTCAACTATTCTCATGCCTCCTCCACTGGAGCTTAAGGATGAGAGGAAAAAAGGAAGTGTGGTTTTTGACTCATCTAAGATGCAAAAACAAGAGAAGTTGCCAACAGAATTCATTTGGCCTGATGCGGATTTAGTTCGGGCCCAACAAGAGCTTAACGAACCCTTGATAGACTTGGATGGATTCTTCAAAGGTGATGAGGCTGCAACTGCCCATGCCGCTGAGCTTATCAGGATGGCTTGCTTGAACCATGGCTTCTTCCAAGTTACCAACCATGGCGTCGACCTAGATCTTATCCGTGCTGCACAGGAAGACATGGGCGCTTTCTTCAAGCTGCCATTGAGCAGGAAGCTCAGTGTCAAGAAGAAGCCTGGCGAATTGTCAGGTTATTCGGGTGCCCATGCGGATCGGTACACTTCTAAGCTGCCGTGGAAGGAGACACTTTCTTTTGTCTATTGTTATGATAGTGGTTCCAAGCCCATGGTAGCTGATTATTTCAAAACTGCCTTAGGTGAAGACTTTGAACAGATAGGGTGGATTTATCAGAAATACTGTGACGCATTGAAGGAGCTGTCTCTAGGGATTATGCAACTCTTGGCAATTAGCTTGGATGTGGATAGTTCCTACTACAGGAAATTATTTGAAGATGGTTACTCAATTATGAGGTGCAACTCCTATCCACCTTGCAAAGAAGCTGGCCTTGTGATGGGCACCGGCCCTCACTGCGACCCAGTGGCTCTAACAATTCTTCATCAAGACCAAGTTAAAGGCCTAGAAGTTTTTGTGGATAACAAATGGCAATCTGTCAAACCTCGACCCGGTGCCCTGGTGGTTAACATTGGTGACACTTTCATGGCACTATCCAATGGAAAATACAAGAGCTGTATACATAGGGCTGTGGTGAACATGGACAAAGAGAGAAGATCATTGACCTTCTTTATGAGCCCGAAAGACGACAAGGTGGTGAGTCCGCCACAGGAGCTTATTGTCAGAGAAGGGCCAAGGAAGTACCCGGACTTCAAATGGTCAGAATTGTTGGAGTTCACTCAGAAGCACTATAGACCCAATAATGATACTCTCCAGAGCTTTGTGGAATGGCGTCTCTCATCTCAAACCAAATAA 1134 0.4603 MDSSASTILMPPPLELKDERKKGSVVFDSSKMQKQEKLPTEFIWPDADLVRAQQELNEPLIDLDGFFKGDEAATAHAAELIRMACLNHGFFQVTNHGVDLDLIRAAQEDMGAFFKLPLSRKLSVKKKPGELSGYSGAHADRYTSKLPWKETLSFVYCYDSGSKPMVADYFKTALGEDFEQIGWIYQKYCDALKELSLGIMQLLAISLDVDSSYYRKLFEDGYSIMRCNSYPPCKEAGLVMGTGPHCDPVALTILHQDQVKGLEVFVDNKWQSVKPRPGALVVNIGDTFMALSNGKYKSCIHRAVVNMDKERRSLTFFMSPKDDKVVSPPQELIVREGPRKYPDFKWSELLEFTQKHYRPNNDTLQSFVEWRLSSQTK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1545 377 PRINTS Isopenicillin N synthase signature 245 266 - -
Vvi4g1545 377 PRINTS Isopenicillin N synthase signature 308 326 - -
Vvi4g1545 377 PRINTS Isopenicillin N synthase signature 81 98 - -
Vvi4g1545 377 FunFam Gibberellin 20 oxidase 2 29 358 - -
Vvi4g1545 377 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 59 350 - -
Vvi4g1545 377 Pfam 2OG-Fe(II) oxygenase superfamily 224 320 IPR044861 -
Vvi4g1545 377 Pfam non-haem dioxygenase in morphine synthesis N-terminal 59 157 IPR026992 -
Vvi4g1545 377 SUPERFAMILY Clavaminate synthase-like 32 359 - -
Vvi4g1545 377 Gene3D - 29 358 IPR027443 -
Vvi4g1545 377 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 320 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1545 Vvi-Chr4 23382448 23384135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1545 48 372 Glycosyltransferase AT5G59530 29.167 8.48e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1545 K05282 - vvi:100255041 773.467