Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0835 ATGGGAAGGGTTCAGGTAAGAGACAAGGAAGAATTTCCTGAGATGGAGAATGGTGATTTCAGTGATTTGCAGTTAATTCATCACATCAGAGGAGTCCTTGTTGCAGTCACGACGGGTGATAGAGAGAATTACGATGAGCTCGTTGGTTATTTGCACCCAAAAAAGAATCTCAATCCTGATGAAGTTGCTATACTCGTGACAACTTTGAAGGCGCTATCGGGAGCTGCGTCCTACATAGATTCTGTACATCACGAAGCCCTTCTTTTTgctGTTTCGAGAATGAGCTTGTGGAATTATGGAACTGTTGTTATGGATGCGCTGCTGGAACTCATCATATCTTtgGCTGCTTCCAATGGGAAATACATTGATTGGTGTTTGGAGATGCTTGTGAAACATTTTGTGCCCCCTTTTTACCTCTTAGATTCTCTGAAACAGGAGAATGGAATTGACAGGAAAAATAAAGTTCTGTCTCGGGTGCATGCAGCTTTGAAAGAGATAGCTGATTTGGTGCCTCTTTCACCCTTGCGACTATCTCCAATCATTGTCCAGAAAATGCCCAGTGTCTTCAGTAAGGAATCTGAGATTGTCATGTATGTCGAGAATATGTTAAGACTGGAGAGTGGTGCAATTGGAGAAATTGTCGGTTCTACAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATGTAAGTGGAATTGGATGGGATGGGATGTTGCAAGAAGATGCCAAAGGCATATTTGAAATGGAGTTAGAAGATGTTACTGAATTTGCAGATGAGGATGAGAATTGTGATAGTATGCCTCCATCAGAGTCGTTAAATAGGAAAAGTTTGCAAGGCAACTTGGTTGTTGAGAAATTAGATGGCCTAATAGTACTGGCTTTTTTGCACCTTGAATCCTGTCAAAGCAGTGACCGTTTGGCAGAGGTATTTGATGTTCTACTGGCATCATTTCAGAAAACTGTATTGAATGCATACAAGTCAAAATTTACCCAGTTTGTGATGTTCTATGCATGTGCACTGGATCCTGAAGGATGTGGTGTGAAATTTGCCATGGTTCTTACAGATATGTTTGCTTGTGATGTTAATCCCCCTATTACtagGATGAGTGCTGTTGCTTATCTTGCTAGTTATCTGTCTCGTGCAAAGTTCCTTTCAGCTGCATTGGTCACTAGTATCATACAAAGTTTGGTAGATTGGTGCTATGCCTATTGCAAATTACATGATTTTGATATGAACCCACGAGCACATCAAGTTTTTTATTCTGGGTGCCAGCAGGCCATCATGTATATTCTGTGTTTTCGCATGAGATCTTTGATGGATATTCCTAGGCTTAAATTGCAGCTTCTTAATATGCCCATGGAGGCAATCTGGAAACATAAATTGAGTCCCTTGAAGGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTCAATGATATGCTCGAGTCTGATCTTTCCAAGGCTTTTGGCGGGATGGATAGACTTGACATGTTCTTCCCATTTGATCCATGTTTATTGAAGAGAAGCGAAAGCTACATAAAGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATACGATGATGACGACAATGACGAAGTCAGTGATAGCGGCAGTGAAGTATCAGATGATGATTTTGTTGACAGGAACACAAAGGATATGATTGATGATGATATGATGGTGAGCGTTGAAGGTCTTGATTTCCCTGACTTGAATAAAATGTCTATCACGcccaaaaaatcttttaaatatgggTTTGAGACACAGTTGGAACAATGTATGCGAATGCCAGCAAGAATCAGACCTTCCACTAGTCCAGAGTCTCTGTGA 1887 0.4059 MGRVQVRDKEEFPEMENGDFSDLQLIHHIRGVLVAVTTGDRENYDELVGYLHPKKNLNPDEVAILVTTLKALSGAASYIDSVHHEALLFAVSRMSLWNYGTVVMDALLELIISLAASNGKYIDWCLEMLVKHFVPPFYLLDSLKQENGIDRKNKVLSRVHAALKEIADLVPLSPLRLSPIIVQKMPSVFSKESEIVMYVENMLRLESGAIGEIVGSTMLPALVDRLLELDVSGIGWDGMLQEDAKGIFEMELEDVTEFADEDENCDSMPPSESLNRKSLQGNLVVEKLDGLIVLAFLHLESCQSSDRLAEVFDVLLASFQKTVLNAYKSKFTQFVMFYACALDPEGCGVKFAMVLTDMFACDVNPPITRMSAVAYLASYLSRAKFLSAALVTSIIQSLVDWCYAYCKLHDFDMNPRAHQVFYSGCQQAIMYILCFRMRSLMDIPRLKLQLLNMPMEAIWKHKLSPLKVCLPTVVVEFLRQAKAAQLFMASESFVFNDMLESDLSKAFGGMDRLDMFFPFDPCLLKRSESYIKPHFVRWSKVRTTYDDDDNDEVSDSGSEVSDDDFVDRNTKDMIDDDMMVSVEGLDFPDLNKMSITPKKSFKYGFETQLEQCMRMPARIRPSTSPESL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0835 628 Pfam RNA polymerase I specific transcription initiation factor RRN3 19 542 IPR007991 GO:0001181|GO:0006361
Ssu5g0835 628 PANTHER TRANSCRIPTION INITIATION FACTOR IA RRN3 11 619 IPR007991 GO:0001181|GO:0006361
Ssu5g0835 628 MobiDBLite consensus disorder prediction 547 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0835 Ssu-Chr5 21627454 21635416 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0835 K15216 - gmx:100814416 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0835 5 21627454 21635416 Ssu5g0835 5 21627454 21635416 ECH