Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01156 ATGGCTATGACCATTATTCTTAAGAAAGATAACAAAGTTATATGCTCCACGAAGTGCCTAGACCCGCCGATTAGGCTGCCAAAAGATTTGAGCATCGCTTCTGTAGTTTCAACAGAGAAGGTATCTAGTCTTTCTAGATTGCCACGATTTTCACTAACTCCGGCACCAGATAATTCACAGGAAAAGGGTGAATGGGGTAGATTTTTGGATTTCCTGCACGAATATAATAGGGTTGCCGTTATAAATTTTGAGCAGCACAAGTTTTACATTCTACCTCCTGCTATAGCTTCAACATCTAGCCCAATCAATGTTGCATATCATATAGATAATACATTCTCTGTTGATACTCTTCCAAGGGATTGTGAATCTGCTTCACACTTAGAGGAATGTGGTGGACCAAATACTGTTGAAGATCTTAAGCTTCCTCGACCTGAAGACCATGCTTATCATTTTACAGCTGAAACTTCTAGTGAATTGCATTCTTTGCTCTCTCTGAAAAATTCCATACGGGTTGATCCAAGTTACCTTAAAACTCTTGGTCAAGTTCATTCTGGATGGATTTTTGGTGGAATAGCTGAGCTTGTTGATAATTCCAGGGATGCCAAAACAACTAAGATGGACATTTTTGTAGATATGATCAAGTTGAAATCTGGGCAGGATGTCCCTATGTTATCAGTTATTGATAATGGTCAAGGGATGAATCATGACGAGGTTATGAAAATGGTATCTTGTGGGCACAAACAGTCTGATAAAGATGACAAGGATCATATTGGCAAATTTGGTGTTGGATTCAAAACAGGAGCAATGAGGCTCGGGAGAGATGTTCTGGTTCTAACACAGACAACCAACTCTAGATCTCTAGCTTTTATTTCACAATCATTGAATGCAGGCAAAGATAATATTGAAATTCCCGTTATTAGTTATTGTCGACAAGGACAGCGTATGGAAGTTGACATAAATATGCAGTCTGAAGCTTTAGCAAAATACAATTTGAAAGCAATTAAGGAATTTTCACCATTTAATAAGTATCTTATTGGTGAAAAGGCAGCCTTGTTTGGTGAGGGTACAGGAACACAGATATACATATGGAACTTGGAAAAATGGGGATCAAGATATTGTTTAGAATGGCATGATGGATTAAAAGGTGGGAGTTCTTTTCACCAAGGTGACATTGTAATCCGCAGCAAAAGATGTCGTTCTCGTATAGGCCAGATTAGTCAAAAGGTTCCATTGGATTACTCATTACGAGCTTATTTAGAAGTTATATTCTTAGTTCCTCGAATGAAGATAAGTGTACAAGGGGCACTGGTTAAAAGCAGACCACTAGCAAATTTTCTGACTCACACTGTTATTGAAACTGGTGAGATATTGGGAAGTCCTATTCAATTAATTTTGGGATTTAGTCAACTAGAGTGGGAGCAGGCAAACTGTGGAATATTTTTATATTGGCATGGTCGCTTAATTGAGGCTTACAAGAGAGTTGGTGGCATGATTCATAATGCAGATGTGGGCCGTGGTGTAATTGGTGTCGTAGATGTAACCACTTTAATGGATGGTCAGGATGGTCATGTGTGGGTGCATAATAACAAACAGGGTTTCCAAGATTGTGAACCATATGCATGTCTTGAGGAGTGGCTGGGTAGAAAAGCTGATGAATTCTGGGACAATAATTTTGATTCACTTAAGTTGGACAAAGATAATTGTGTCTTCAAACCTGATTGTGAGTGGGTACAATGTGACAAGTGCAGAAAGTGGAGAGTATTACCTTCTGACTTTGACAGTAGAAAATTACCTATGCAATGGTTTTGTTATATGGTGCCTTTCAAAGGACAATGTGCAGATGCTGAACAGAAGATGGAGGATGGCGTGGTAAATGTTTCCACAATGCGGTCGGGTTATGACTGCATGCTGAAGGATTCTGATTGTAAAAAGATTGAAGTTGTTATTAAAACCACTACTGGGACAGATGACAAATTAGTCAATTCTGAGGATGTCAGATTGCCATCCCTTAAGCGGTTGAGAGGGCTACGAAGATAG 2037 0.3913 MAMTIILKKDNKVICSTKCLDPPIRLPKDLSIASVVSTEKVSSLSRLPRFSLTPAPDNSQEKGEWGRFLDFLHEYNRVAVINFEQHKFYILPPAIASTSSPINVAYHIDNTFSVDTLPRDCESASHLEECGGPNTVEDLKLPRPEDHAYHFTAETSSELHSLLSLKNSIRVDPSYLKTLGQVHSGWIFGGIAELVDNSRDAKTTKMDIFVDMIKLKSGQDVPMLSVIDNGQGMNHDEVMKMVSCGHKQSDKDDKDHIGKFGVGFKTGAMRLGRDVLVLTQTTNSRSLAFISQSLNAGKDNIEIPVISYCRQGQRMEVDINMQSEALAKYNLKAIKEFSPFNKYLIGEKAALFGEGTGTQIYIWNLEKWGSRYCLEWHDGLKGGSSFHQGDIVIRSKRCRSRIGQISQKVPLDYSLRAYLEVIFLVPRMKISVQGALVKSRPLANFLTHTVIETGEILGSPIQLILGFSQLEWEQANCGIFLYWHGRLIEAYKRVGGMIHNADVGRGVIGVVDVTTLMDGQDGHVWVHNNKQGFQDCEPYACLEEWLGRKADEFWDNNFDSLKLDKDNCVFKPDCEWVQCDKCRKWRVLPSDFDSRKLPMQWFCYMVPFKGQCADAEQKMEDGVVNVSTMRSGYDCMLKDSDCKKIEVVIKTTTGTDDKLVNSEDVRLPSLKRLRGLRR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01156 678 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 3 674 IPR045261 GO:0016887
Cca06g01156 678 Pfam CW-type Zinc Finger 575 617 IPR011124 GO:0008270
Cca06g01156 678 Gene3D - 562 621 - -
Cca06g01156 678 Gene3D - 183 345 IPR036890 -
Cca06g01156 678 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 191 304 - -
Cca06g01156 678 Pfam Morc6 ribosomal protein S5 domain 2-like 413 554 IPR041006 -
Cca06g01156 678 ProSiteProfiles Zinc finger CW-type profile. 570 620 IPR011124 GO:0008270
Cca06g01156 678 PANTHER OS06G0622000 PROTEIN 3 674 - -
Cca06g01156 678 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 186 353 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01156 Cca-Chr6 25935659 25950595 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01156 - - gmx:100782161 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01156 06 25935659 25950595 Cca06g01156 06 25935659 25950595 ECH