Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00910 ATGGTCATGTTCCTTGTTCTGAAGAAAGATAAAAAAATGATATGCACCACGAGGTGCCTAGACCCGCCGATCGATTTGCCACAGGAATTGAGCTTAACATGTGAAATTTCCAAAAATAAGATACATAGTCTTTCTGAATTTCCCCAATTTTCACTAACTCCGGTCCCAAATAATTTACACGAGATGTCTGAGTGGGGGAACTTTTTGAATTACCTGTGTAAAAAAGACAAGGTTGCTCTTATAAACTTTGAGCAGTACCAATTTTACATTCTACCTCCTGCATTAGTTTCAACATCAAGCTCAGTCAATGTTGCATATAATATAGATAATACAGGTTCTGTAGATACTCGTCCAAGGGATAGTGAATCAGCAGGTTCACAGTTAGAGGAATGCGGTGGACCAAATACAGCTGAAGGTCTTAAGTTTTCTCGAGCTGAAGAAACTTGCAACGAATATCAATCTAGAGTCCCTCTAAAAAATTTCATACGGGCAGACCCAAGTTACCTTAAAACTCTTGGCCAGGCTCATTCTGGATGGATTTTTGGTGCAATTGCTGAGCTTGTTGATAATTCCAAGGATGCCAAAGCAACTAAAATGGACATTTTTGTAGATATCATCCAGTTGAAGAAATCTCGGAAGGATGTTCCGATGCTGTGTCTTATTGATGATGGACAAGGGATGAACCATGATGAGGTTATGAAAATGGTATCTTTTGGGCACAAGCAATCTCATAAAGTTGACACGGACCGCATTGGCAAATTTGGTGTTGGATTCAAAACAGGAGCAATGAGGCTTGGGAGAGATGTTCTGGTTCTAACACAAACAACTACTTCCAGATCTCTAGCTTTTCTTTCACAATCATTGAATGAAGGCAAAGATAATATTGAAATTCCCATAGTCAGCTATTGCCGACAAGGACAACTTATGGAAATTGACCTAAGTATGCAGTCTGAAGCTTTGGCAAAATACAATTTGAAAGCTATTAAGGATTTTTCACCATTTAACAAGTATCTTATTGGTGAAAAGGCAGCCCTGTTTGGTACTGGTACAGGAACACAAATATACATATGGAACTTGGATGAATGGGGATCAAAGTATTGTTTAGAATGGCATGATGGACTAAAAGGTGGGAGTTCTTTTCACCAAGGTGACATTCTTATCCGAAGCAAGAGGACTCGTTCTCGTCCAGGCCAGATTAGTCAAAAGGTTAAAAGTCGACCATTATCAAAATTCCTTACTCAAACTATTGTTGAAACTGGTGACATCTTGAGAAGGCCAGTTGAATTAATTCTTGGATTTAGTCAATTAGAGTGGGAGCGGGCCAACTGTGGAATGTTTTTGTATTGGCATGGTCGCCTAATTGAGGCTTACAAGAGAGTTGGTGGAATGACTCATAGTGCAGATGTTGGCCGGGGTGTAATTGGTGTTGTTGATGTGACCAATTTAATGGATGACGAGGATGGCCGGGTGTGGGTACACAATAACAAGCAGGGATTCCAAGACTCAGAACAATATGCATGTCTTGAGCAGTGGCTGAGTAGAAAAGTAGATGAATACTGGGACAACAATTTTGACGCCCTTGAGTTGAACAAAGATAATTGTGTCTTCAAACCTGATCATGAGTGGGTTCAATGTGACAAGTGCAGAAAGTGGAGAATATTACCTACAGACTTTGATAGCAGAAAATTGCCTTTGGAATGGTTTTGTTATATGAAGCCTTTCAAAGGTCATTGTTCAGATTCTGAACAGAAGATGGCGCCGGGCATAGTTAATGTTTCCACAAAGAGGTCGGGTTATGCTTGCTTGTTGAAGGATTCCAACGATAAAAAGGTGGAAGGTGTTGGGAAAACCTCTGGCGCAGATGATAAATCAATCAAATATGAGGATGCCAAATTTCCAGCATTAAAGCGGTTGAGAAAGGGGCAATGGAAACAATAG 1938 0.4014 MVMFLVLKKDKKMICTTRCLDPPIDLPQELSLTCEISKNKIHSLSEFPQFSLTPVPNNLHEMSEWGNFLNYLCKKDKVALINFEQYQFYILPPALVSTSSSVNVAYNIDNTGSVDTRPRDSESAGSQLEECGGPNTAEGLKFSRAEETCNEYQSRVPLKNFIRADPSYLKTLGQAHSGWIFGAIAELVDNSKDAKATKMDIFVDIIQLKKSRKDVPMLCLIDDGQGMNHDEVMKMVSFGHKQSHKVDTDRIGKFGVGFKTGAMRLGRDVLVLTQTTTSRSLAFLSQSLNEGKDNIEIPIVSYCRQGQLMEIDLSMQSEALAKYNLKAIKDFSPFNKYLIGEKAALFGTGTGTQIYIWNLDEWGSKYCLEWHDGLKGGSSFHQGDILIRSKRTRSRPGQISQKVKSRPLSKFLTQTIVETGDILRRPVELILGFSQLEWERANCGMFLYWHGRLIEAYKRVGGMTHSADVGRGVIGVVDVTNLMDDEDGRVWVHNNKQGFQDSEQYACLEQWLSRKVDEYWDNNFDALELNKDNCVFKPDHEWVQCDKCRKWRILPTDFDSRKLPLEWFCYMKPFKGHCSDSEQKMAPGIVNVSTKRSGYACLLKDSNDKKVEGVGKTSGADDKSIKYEDAKFPALKRLRKGQWKQ 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00910 645 Gene3D - 150 333 IPR036890 -
Vian10g00910 645 Gene3D - 528 586 - -
Vian10g00910 645 MobiDBLite consensus disorder prediction 113 135 - -
Vian10g00910 645 Pfam Morc6 ribosomal protein S5 domain 2-like 398 520 IPR041006 -
Vian10g00910 645 ProSiteProfiles Zinc finger CW-type profile. 536 586 IPR011124 GO:0008270
Vian10g00910 645 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 401 604 IPR045261 GO:0016887
Vian10g00910 645 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 171 341 IPR036890 -
Vian10g00910 645 Pfam CW-type Zinc Finger 541 583 IPR011124 GO:0008270
Vian10g00910 645 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 182 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00910 Vian-Chr10 9311369 9336633 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00910 - - vra:106777695 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00910 10 9311369 9336633 Vian10g00910 10 9311369 9336633 ECH