Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0984 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0985 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0987 . . . . Adu04g02527 . . . . . . . . . . . . . . . Arst4g03357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01485 . Lasa3g02040 . . . . . . . . . . . . . Mepo3g02237 . Mesa25g01982 . . . . . Phac8g00813 . Phco3g02656 . . . . . Pste5g01225 . . Pte8g00601 . . Pumo5g00177 . Pvu8g0568 . Rops8g00995 . Seca2g00895 . Spst1g01144 . . . . . . . Trre13g02404 . . . Vian2g00543 . Vifa5g01610 . Vimu6g00621 . Viun5g00786 . Vivi6g02942 . . .
Vvi4g0988 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03538 Bva04g03460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa3g02043 . . . . . . . . . Lja1g3028 . . . Mepo3g02239 . Mesa25g01980 . . . . . . . Phco3g02660 . . . . . Pste5g01219 . . . . . Pumo5g00171 . Pvu8g0564 . Rops8g00990 . Seca2g00887 . Spst1g01148 . . . . . . . Trre13g02399 . . . Vian2g00539 . Vifa5g01615 . Vimu6g00625 . Viun5g00782 . Vivi6g02946 . . .
Vvi4g0989 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01481 . Lasa3g02045 . . . . . . . . . Lja1g3027 . . . Mepo3g02240 . Mesa25g01979 . . . . . . . Phco3g02661 . . . . . Pste5g01217 . . . . . Pumo5g00170 . Pvu8g0563 . Rops8g00989 . Seca2g00886 . Spst1g01149 . . . . . . . Trre13g02398 . . . Vian2g00538 . Vifa5g01616 . Vimu6g00626 . Viun5g00781 . Vivi6g02947 . . .
Vvi4g0990 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03540 Bva04g03462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01479 . Lasa3g02046 . . . . . . . . . Lja1g3026 . . . Mepo3g02241 . Mesa25g01978 . . . . . Phac8g00805 . Phco3g02662 . . . . . Pste5g01216 . . . . . . . Pvu8g0562 . Rops8g00988 . Seca2g00883 . Spst1g01150 . . . . . . . Trre13g02397 . . . Vian2g00537 . Vifa5g01617 . Vimu6g00627 . Viun5g00780 . Vivi6g02948 . . .
Vvi4g0991 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01478 . Lasa3g02047 . . . . . . . . . . . . . Mepo3g02242 . Mesa25g01977 . . . . . . . Phco3g02663 . . . . . Pste5g01214 . . . . . . . Pvu8g0561 . . . . . Spst1g01151 . . . . . . . Trre13g02396 . . . . . . . Vimu6g00628 . . . Vivi6g02949 . . .
Vvi4g0992 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g3025 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0984 Chr4 16354752 16356634 +
Vvi Vvi4g0985 Chr4 16361158 16362655 -
Vvi Vvi4g0986 Chr4 16379291 16379858 -
Vvi Vvi4g0987 Chr4 16391601 16396209 +
Adu Adu04g02527 Chr04 111536611 111541583 +
Arst Arst4g03357 Chr4 111516001 111520991 +
Lapu Lapu1g01485 Chr1 27653603 27660752 -
Lasa Lasa3g02040 Chr3 520412021 520414986 +
Mepo Mepo3g02237 Chr3 32064259 32069759 +
Mesa Mesa25g01982 Chr25 24455600 24460593 -
Phac Phac8g00813 Chr8 5300084 5307067 -
Phco Phco3g02656 Chr3 53135068 53140959 +
Pste Pste5g01225 Chr5 7978368 7986355 -
Pte Pte8g00601 Chr8 28557370 28562992 +
Pumo Pumo5g00177 Chr5 4697496 4706249 -
Pvu Pvu8g0568 Chr8 5001406 5007871 -
Rops Rops8g00995 Chr8 21105373 21111316 -
Seca Seca2g00895 Chr2 13791614 13799117 -
Spst Spst1g01144 Chr1 13802856 13808745 +
Trre Trre13g02404 Chr13 21612267 21616416 -
Vian Vian2g00543 Chr2 6589016 6594312 -
Vifa Vifa5g01610 Chr5 466388962 466392118 +
Vimu Vimu6g00621 Chr6 7387430 7392063 +
Viun Viun5g00786 Chr5 4932320 4938596 -
Vivi Vivi6g02942 Chr6 116554102 116558553 +
Vvi Vvi4g0988 Chr4 16404888 16417338 +
Bva Bva13g03538 Chr13 23950269 23954396 +
Bva Bva04g03460 Chr04 27440443 27444600 +
Lasa Lasa3g02043 Chr3 520507277 520511671 +
Lja Lja1g3028 Chr1 36660335 36667556 -
Mepo Mepo3g02239 Chr3 32093889 32100347 +
Mesa Mesa25g01980 Chr25 24435369 24441941 -
Phco Phco3g02660 Chr3 53167577 53171713 +
Pste Pste5g01219 Chr5 7928703 7933177 -
Pumo Pumo5g00171 Chr5 4647740 4652744 -
Pvu Pvu8g0564 Chr8 4969071 4974003 -
Rops Rops8g00990 Chr8 21048405 21058091 -
Seca Seca2g00887 Chr2 13662245 13668374 -
Spst Spst1g01148 Chr1 13834703 13838263 +
Trre Trre13g02399 Chr13 21588510 21593874 -
Vian Vian2g00539 Chr2 6548643 6554808 -
Vifa Vifa5g01615 Chr5 466506209 466510234 +
Vimu Vimu6g00625 Chr6 7423952 7431631 +
Viun Viun5g00782 Chr5 4900911 4905584 -
Vivi Vivi6g02946 Chr6 116586116 116590655 +
Vvi Vvi4g0989 Chr4 16418701 16420923 -
Bva Bva13g03539 Chr13 23954668 23957725 -
Lapu Lapu1g01481 Chr1 27613214 27615394 +
Lasa Lasa3g02045 Chr3 520512784 520514709 -
Lja Lja1g3027 Chr1 36656694 36659976 +
Mepo Mepo3g02240 Chr3 32100775 32103329 -
Mesa Mesa25g01979 Chr25 24428935 24430740 +
Phco Phco3g02661 Chr3 53173109 53175289 -
Pste Pste5g01217 Chr5 7923920 7926579 +
Pumo Pumo5g00170 Chr5 4644238 4647338 +
Pvu Pvu8g0563 Chr8 4965940 4968114 +
Rops Rops8g00989 Chr8 21044953 21048127 +
Seca Seca2g00886 Chr2 13658859 13661033 +
Spst Spst1g01149 Chr1 13839645 13841819 -
Trre Trre13g02398 Chr13 21585076 21587229 +
Vian Vian2g00538 Chr2 6545089 6547272 +
Vifa Vifa5g01616 Chr5 466511197 466513356 -
Vimu Vimu6g00626 Chr6 7429118 7431295 -
Viun Viun5g00781 Chr5 4897420 4900697 +
Vivi Vivi6g02947 Chr6 116591117 116593862 -
Vvi Vvi4g0990 Chr4 16462428 16467355 +
Bva Bva13g03540 Chr13 23960291 23963603 +
Bva Bva04g03462 Chr04 27448303 27451292 +
Lapu Lapu1g01479 Chr1 27603883 27607495 -
Lasa Lasa3g02046 Chr3 520540236 520542817 +
Lja Lja1g3026 Chr1 36651373 36654982 -
Mepo Mepo3g02241 Chr3 32109186 32112789 +
Mesa Mesa25g01978 Chr25 24414064 24416898 -
Phac Phac8g00805 Chr8 5257101 5260242 -
Phco Phco3g02662 Chr3 53180086 53182257 +
Pste Pste5g01216 Chr5 7903359 7906932 -
Pvu Pvu8g0562 Chr8 4957868 4960850 -
Rops Rops8g00988 Chr8 21028488 21032310 -
Seca Seca2g00883 Chr2 13629469 13632225 -
Spst Spst1g01150 Chr1 13853790 13856536 +
Trre Trre13g02397 Chr13 21576606 21579422 -
Vian Vian2g00537 Chr2 6534605 6537502 -
Vifa Vifa5g01617 Chr5 466762165 466763948 +
Vimu Vimu6g00627 Chr6 7434001 7436908 +
Viun Viun5g00780 Chr5 4889058 4892005 -
Vivi Vivi6g02948 Chr6 116635261 116637964 +
Vvi Vvi4g0991 Chr4 16483885 16487138 +
Bva Bva13g03541 Chr13 23965400 23967290 +
Lapu Lapu1g01478 Chr1 27592457 27595861 -
Lasa Lasa3g02047 Chr3 520670177 520671987 +
Mepo Mepo3g02242 Chr3 32138496 32140853 +
Mesa Mesa25g01977 Chr25 24399037 24400995 -
Phco Phco3g02663 Chr3 53192020 53195074 +
Pste Pste5g01214 Chr5 7883930 7886330 -
Pvu Pvu8g0561 Chr8 4938443 4940902 -
Spst Spst1g01151 Chr1 13861340 13863764 +
Trre Trre13g02396 Chr13 21557275 21565384 -
Vimu Vimu6g00628 Chr6 7454954 7457419 +
Vivi Vivi6g02949 Chr6 116649004 116653320 +
Vvi Vvi4g0992 Chr4 16523767 16527061 +
Lja Lja1g3025 Chr1 36628373 36631976 -
Vvi Vvi4g0993 Chr4 16527164 16528699 -