Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01149 ATGGTGATGGCACACACCACACCCCTCCACTGTTTATGGCATCCCTTCTATCTCCTATGTGTGATTCTTCTCTGTGCAACCCCCTCTCTCTTAATTGATGTTCACCCACAAGACAAGGCCTCTCTTCTTCTGTTAAAGTCAAGGCTGCAAGACCCGTACCAGAGTTTGTCCAACTGGGCAGGCTCCAACTGCACTTCATGGAGTGGAATCACCTGTGACAACAGAACTGGGAGGGTGCTTTCCATCAACCTAACTAGTATGAACTTGTCAGGCCAAATCCGCCCCAGTTTGTGCCAGCTTTCATACCTCAGCAAGGTGGGGTTGTCCCACAACAACTTCACTTCCCTTCTTCCCGAATGTTTTGGAAATTTGCTTAACCTAAGAGCCATTGATCTCAGCTACAACAGGTTTCATGGTGGGATACCAGACACTTTCATGAGGCTCAGACACCTTACTGAGCTTGTTTTGAGTGGGAACCCTGGTTTGGGGGGTCCACTGCCTGCATGGATTGGAAACTTCTCTACAAATCTTGAAAGGCTACATCTTGGTGTCTGTTCATTCAGAGGGGGCATACCTGAGAGCTTGCTTCACTTGAAGTCCCTCAAGTATTTGGACCTTGAGAACAATCTCTTGTCTGGTACACTGGTTGGTTTTCAGCAGCCTTTGGTTTTGCTCAATCTTGCTTCCAATCAGTTTGCTGGTACTTTGCCTTGCTTTTCAGCTTCAGTTCAGTCTCTAACTGTGTTGAATTTGTCTAACAATTCTATTGTGGGGGGACTGCCTGCTTGTATTGCTTCCTTGCAAGCTTTGACTCATTTGAACCTGTCGGGCAACCATTTAAAGTATAGAATATATCCCAGGCTTGTGTTTTCTGAGAAACTTCTTGTTTTGGACTTGAGTTATAATGATTTTTCTGGTCCTATTCCCAGTAAAATTGCTGAGACTACCGATAAATTTGGCCTTGTTCTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAAGTTTGCAGGCCTTGTTTCTCTCTCACAATCTTCTCTCTGGAGAAATTCCTGCCAGAATTGGAAATTTGACTTATCTTCAGGTCATTGATCTCTCACACAACTCTTTATCTGGTGCCATTCCATTTAGCATTGTTGGGTGCTTTCAGCTGTATGCTCTAATATTGAATAACAATAATCTTTCGGGTGTAATTCAACCGGAGTTTGATGCATTGGATATCTTGAGGATACTGGATATAAGCAGCAACAGGTTTTCCGGGGCTATCCCACTCACTCTAGCTGGATGTAAATCTCTGGAGATTGTAGATTTTAGTTCCAATGAGCTTTCGGGATCCTTGAATGACGCCATAACCAAATGGTCAAACCTCAGGTATTTGTCTCTTGCTCAGAACAAGTTCAGTGGAAATTTGCCTAATTGGTTGTTCACATTTGACGCAATAGAAACAATGGATTTCTCACATAACAAGTTTTCGGGCTTCATCCCTGATATTAATTTTAAGGGTAGCTTAATATTTAACACCAGGAATGTCACTGTTAAAGAGCCACTGGTTGCACCAAGAAATGTTCAACTGAGAGTTTCAGCTGTTGTTTCTGATAACAATCAACTCAGTTTTACTTATGATCTATTCTCAATGGTTGGAATCGATCTATCCAGCAACTTGCTCCACGGAGAGATTCCAAGGGGCTTATTTGGTCTCGTTGGCCTAGAATATCTGAATTTGTCATGCAACTTTCTCTATGGACAGCTTCCAGGTTTGCAGAAAATGCAGAATTTGAAAGCCTTAGATTTGTCACATAATTCCTTGTCAGGACATATCCCAGGAAACATTTCTAGCCTACAAGATCTGTCCATTTTGAATCTGTCTTACAATTGTTTTTCGGGGTATGTTCCCCAGAAGCAAGGATATGGGAGATTTCCCGGCGCATTTGCTGGAAATCCGGATCTTTGCATGGAATCTTCCAGTGGAGTATGTGATGATGGAAGGACTCAGTCTGTGCAAGGAAGTTCTTTCAGGGAAGATAGGATGGAGGGACCAATATCTCTGGGGATTTTCTTTATCAGTGCTTTTGTTAGTTTTGATTTTGGTGTTGTTGTTCTCTTCTGTTCAGCAAGGGCAAGAAATTACATTCTTCAAACAAAAGTTTGA 2175 0.4234 MVMAHTTPLHCLWHPFYLLCVILLCATPSLLIDVHPQDKASLLLLKSRLQDPYQSLSNWAGSNCTSWSGITCDNRTGRVLSINLTSMNLSGQIRPSLCQLSYLSKVGLSHNNFTSLLPECFGNLLNLRAIDLSYNRFHGGIPDTFMRLRHLTELVLSGNPGLGGPLPAWIGNFSTNLERLHLGVCSFRGGIPESLLHLKSLKYLDLENNLLSGTLVGFQQPLVLLNLASNQFAGTLPCFSASVQSLTVLNLSNNSIVGGLPACIASLQALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSYNDFSGPIPSKIAETTDKFGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGAIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISSNRFSGAIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWSNLRYLSLAQNKFSGNLPNWLFTFDAIETMDFSHNKFSGFIPDINFKGSLIFNTRNVTVKEPLVAPRNVQLRVSAVVSDNNQLSFTYDLFSMVGIDLSSNLLHGEIPRGLFGLVGLEYLNLSCNFLYGQLPGLQKMQNLKALDLSHNSLSGHIPGNISSLQDLSILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCMESSSGVCDDGRTQSVQGSSFREDRMEGPISLGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01149 724 PRINTS Leucine-rich repeat signature 369 382 - -
Spst1g01149 724 PRINTS Leucine-rich repeat signature 598 611 - -
Spst1g01149 724 FunFam Leucine-rich repeat receptor protein kinase EMS1 547 642 - -
Spst1g01149 724 SUPERFAMILY RNI-like 291 637 - -
Spst1g01149 724 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Spst1g01149 724 Gene3D Ribonuclease Inhibitor 148 217 IPR032675 -
Spst1g01149 724 SUPERFAMILY L domain-like 35 310 - -
Spst1g01149 724 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 315 512 - -
Spst1g01149 724 PANTHER UNNAMED PRODUCT 222 312 - -
Spst1g01149 724 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Spst1g01149 724 Pfam Leucine rich repeat 222 280 IPR001611 GO:0005515
Spst1g01149 724 ProSiteProfiles Leucine-rich repeat profile. 600 622 IPR001611 GO:0005515
Spst1g01149 724 Gene3D Ribonuclease Inhibitor 218 669 IPR032675 -
Spst1g01149 724 SMART LRR_typ_2 598 622 IPR003591 -
Spst1g01149 724 SMART LRR_typ_2 198 220 IPR003591 -
Spst1g01149 724 SMART LRR_typ_2 243 266 IPR003591 -
Spst1g01149 724 SMART LRR_typ_2 100 123 IPR003591 -
Spst1g01149 724 SMART LRR_typ_2 551 575 IPR003591 -
Spst1g01149 724 SMART LRR_typ_2 342 366 IPR003591 -
Spst1g01149 724 SMART LRR_typ_2 267 292 IPR003591 -
Spst1g01149 724 Gene3D Ribonuclease Inhibitor 37 147 IPR032675 -
Spst1g01149 724 FunFam LRR receptor-like serine/threonine-protein kinase EFR 35 314 - -
Spst1g01149 724 Pfam Leucine Rich Repeat 600 622 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01149 Spst-Chr1 13839645 13841819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01149 81 711 Miscellaneous Gene Families AT3G53240 31.717 1.02e-71 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01149 - - gmx:100814791 1279.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01149 1 13839645 13841819 Spst1g01149 1 13839645 13841819 ECH