Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00538 ATGCTGATGGTGATGGCACACACCACACCCCTCCACCGTCTATGGCACCCCTTCACTCTCCTCTCTGTGATTCTTCTCTGTGCAATCCCTTCACTCTCAATTGATGTTTTCCTACAAGATAAAGCCTCTCTTCTTCTGTTCAGGTCAAGACTGCAAGACCCTTACCAGAGTTTGTCCAACTGGGCAGGCTCTAACTGCACTTCATGGACTGGAATCACCTGTGACAACAGAACTGGGAGGGTGCTTTCCATCAACCTAACTAGTATGAGCCTTTCAGGCCAAATCCACCCCAGTTTGTGCCAGCTTCCGTACCTCAGCAAGGTGGGGTTGTCCCACAACAACTTCACTTCCCTTCTTCCTGAATGTTTTGGAAATTTGCTCAACCTAAGAGTAATTGATCTCAGCTATAACAGGTTTCACGGTGGGATACCAGACTCTTTCATGAGGCTCAGGCACCTCACTGAGCTTGTTTTGAGTGGGAACCCCGGTTTGGGTGGTCCACTGCCTGCTTGGATTGGGAACTTCTCTACAAATCTGGAAAGGCTACATCTTGGTGTGTGTTCATTCCGTGGGGGCATACCTGAGAGCCTTCTTTACTTGAAGTCCCTCAAGTATTTGGACCTTGGGAACAATCTCTTGTCTGGTAATCTGGTTGGTTTTCGGCAGCCTTTGGTTGTACTTAATCTTGCTTCCAATCAGTTTGCTGGTACTTTGCCTTGCTTTTCAGCTTCAGTTCAGTCTCTGACTGTGTTGAATTTGTCTAATAATTCTATTGTTGGGGGACTGCCTGCTTGTATTGCTTCCTTGCAAGCTTTGACTCATTTGAACCTGTCAGGGAACCATTTGAAGTATAGAATATATCCTAGGCTTGTGTTTTCATTGAAACTTCTTGTTTTGGACTTGAGTTATAATGATTTTTCCGGTCCTATTCCCAGTCAAATTGCTGAGACTTCCGAGAAACTTCTTGGCCTTGTTCTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAACTTTGGAGGCCTTGTTTCTCTCTCACAATATTCTCTCTGGAGAAATTCCTGCCAGAATTGGAAATTTAACCTATCTTCAGGTCATTGATTTCTCACACAACGCTTTGTCTGGTACCATTCCATTCAGCATTGTTGGGTGCTTTCAGCTGTATGCTCTAATACTGAATAACAACAATCTTTCTGGGGTAATTCAACCGGAGTTTGATGCATTGGATACCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCCGGGACTATCCCACTCACTCTGGCAGGATGTAAATCTCTCGAGATTGTAGATTTTAGTTCCAATGAGCTTTCTGGATCCTTGAATGATGCAATAACGAAATGGTCAAACCTCAGGTATTTGTCCCTTGCTCAGAATAAGTTCAGTGGAAATTTGCCTAGTTGGTTGTTCACATTTGACGCAATAGAAACAATGGATTTCTCACATAACAAGTTTTCTGGCTTCATCCCTGATATTAATTTAAAGGGTAGCTTGATATTTAACACTAGGAATGTCACTGTTAAAGAGCCATTGGTTGCAGCAAGAAACCTTCAACTGAGATTTTCAGCTGTTGTTTCTGATAGCAATCAACTCGGTTTCACTTATCATATATCCTCAATGGTTGGAATCGATTTATCCAGCAACTTGCTCCATGGAGAGATTCCAAGGGGCTTATTTGGTCTGGCTGGCCTAGAATATCTGAATTTTTCATTCAACTTTCTCTATGGACAGCTTCCAGGTCTGCAGAAAATGCAGAGTTTGAAAGCCTTAGATTTGTCACATAATTCCTTGTCAGGGCATATTCCAGGAAACATTTCTAGCCTTCAAGATCTGTCCATTTTGAATCTGTCGTACAACTGTTTTTCTGGGTATGTTCCCCAGAAGCAAGGATATGGGAAATTTCCTGGTGCATTTGCTGGAAATCCAGATCTGTGCATGGAATCTTCCAGTGGCGTATGTGATGATGGAAGGACTCAATCTGTGCTAGGAAGTTCTTTCAGGGAAGATAGGATGGAGGGACCAATATCTCTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTGTTCTCTTCTGTTCAGCAAGGGCGAGAAATTACATTCTTCAAACCAAAGTTTGA 2184 0.4258 MLMVMAHTTPLHRLWHPFTLLSVILLCAIPSLSIDVFLQDKASLLLFRSRLQDPYQSLSNWAGSNCTSWTGITCDNRTGRVLSINLTSMSLSGQIHPSLCQLPYLSKVGLSHNNFTSLLPECFGNLLNLRVIDLSYNRFHGGIPDSFMRLRHLTELVLSGNPGLGGPLPAWIGNFSTNLERLHLGVCSFRGGIPESLLYLKSLKYLDLGNNLLSGNLVGFRQPLVVLNLASNQFAGTLPCFSASVQSLTVLNLSNNSIVGGLPACIASLQALTHLNLSGNHLKYRIYPRLVFSLKLLVLDLSYNDFSGPIPSQIAETSEKLLGLVLLDLSHNQFSGEIPVKITELKTLEALFLSHNILSGEIPARIGNLTYLQVIDFSHNALSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDTLRILDISNNRFSGTIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWSNLRYLSLAQNKFSGNLPSWLFTFDAIETMDFSHNKFSGFIPDINLKGSLIFNTRNVTVKEPLVAARNLQLRFSAVVSDSNQLGFTYHISSMVGIDLSSNLLHGEIPRGLFGLAGLEYLNFSFNFLYGQLPGLQKMQSLKALDLSHNSLSGHIPGNISSLQDLSILNLSYNCFSGYVPQKQGYGKFPGAFAGNPDLCMESSSGVCDDGRTQSVLGSSFREDRMEGPISLGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00538 727 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 323 436 IPR046959 -
Vian2g00538 727 FunFam Leucine-rich repeat receptor protein kinase EMS1 550 645 - -
Vian2g00538 727 SMART LRR_typ_2 126 160 IPR003591 -
Vian2g00538 727 SMART LRR_typ_2 200 222 IPR003591 -
Vian2g00538 727 SMART LRR_typ_2 245 268 IPR003591 -
Vian2g00538 727 SMART LRR_typ_2 601 625 IPR003591 -
Vian2g00538 727 SMART LRR_typ_2 554 578 IPR003591 -
Vian2g00538 727 SMART LRR_typ_2 102 125 IPR003591 -
Vian2g00538 727 SMART LRR_typ_2 269 294 IPR003591 -
Vian2g00538 727 SMART LRR_typ_2 321 345 IPR003591 -
Vian2g00538 727 Gene3D Ribonuclease Inhibitor 39 147 IPR032675 -
Vian2g00538 727 PRINTS Leucine-rich repeat signature 324 337 - -
Vian2g00538 727 PRINTS Leucine-rich repeat signature 601 614 - -
Vian2g00538 727 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 316 524 - -
Vian2g00538 727 SUPERFAMILY L domain-like 39 312 - -
Vian2g00538 727 ProSiteProfiles Leucine-rich repeat profile. 603 625 IPR001611 GO:0005515
Vian2g00538 727 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Vian2g00538 727 Pfam Leucine rich repeat 419 478 IPR001611 GO:0005515
Vian2g00538 727 Pfam Leucine rich repeat 224 282 IPR001611 GO:0005515
Vian2g00538 727 Pfam Leucine Rich Repeat 603 625 IPR001611 GO:0005515
Vian2g00538 727 Gene3D Ribonuclease Inhibitor 222 672 IPR032675 -
Vian2g00538 727 FunFam LRR receptor-like serine/threonine-protein kinase EFR 38 315 - -
Vian2g00538 727 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Vian2g00538 727 SUPERFAMILY RNI-like 294 640 - -
Vian2g00538 727 Gene3D Ribonuclease Inhibitor 148 221 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00538 Vian-Chr2 6545089 6547272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00538 53 647 Receptor kinase-like Gene Family AT5G46330 32.023 7.70e-72 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00538 - - gmx:100814791 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00538 2 6545089 6547272 Vian2g00538 2 6545089 6547272 ECH