Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01617 ATGGCCTCGGTGTTGGTTTATCATGTGGTGGGAGATCTGACGGTGGGGAAGCCGGAGTTGGTTGAGTTTCATGTCACGGAGACGGTGGAGTCTGCGATTAGAGCGATTGCGGAATCGCCGGAAGGGAGTATTCCGGTTTGGAAGAAGAGATCTGTTGGGGTGATTGAGAATAGTGATATGAGACAGATGAGGTTTGTTGGGATTCTTAGTTCGTTTGATATTGTTGCGTTCTTGGCTAAGACTCACTGTTTGGAGGATCAAGATAAGGCTATGAAGACACCGGTTTCTGAGGTTGTTCTTTCCAATAATTCTTTGCTTAGATTGGTTGATCCTGGAACAAGGGTGATAGATGCACTGGACATGATGAAGCAAGGCGTTAAACGTTTGCTTGTTCCAAAGAGTATAGTATGGAAGGGCATGAGTAAGCGTTTCTCGGTAATCTACTATGGCAAGTGGCCTAAGACTCCTGAATCTCCTAGCAGCAGCAGCAACAATCTACCTGCGAATGTAAACCGGAACGCCTCAGCATTCATCCGTGATAAGTACTGTTGTCTATCCAGAGAAGACGTACTCCGTTTCATCATCGGTTGTCTTGGAGCTCTAGCTCCTATTCCTCTCACTTCCATCGCTGCACTTGGAGCAATTAATCCAAACTACAGCTACATTGAATCCTCCACTCCCGCACTCGAATCATCTCAAAAGGTTCCTCAAGACCCAAGTGCAGTTGCAGTAATAGAAACCACGTCAGACGGTCAGTGTAAGATCATTGGAGAAATTTCTGCAATCAAATTATGGAAATGTGATTACATATCCGCCGCTTGGGCTTTAGCAAATCTCACGGCAGGACAGTTTGTTATGGGAGTTGAAGATAACGTCACCTCAAGATCACTGCCTGACTTCTGTGTCAATTCAAGATCCGGAGGAGATAATGATTTGGTTAATGGTGGTTCGAGAAAACCAAAGAAATTCAGTAGCAGGAGTATCGGATTCTTCAACAAATCTGCAAGCCATAGTTTTGGTTCGAGGAGCATGTATCGAGGTAGAAGTGCACCGTTGACATGTAAAATGACTAGTTCATTGGCTGCTGTCATGGCTCAGATGCTATCTCATAGAGCAACTCATGTTTGGGTGACTGAGGACGAGAATGAAGAGATTTTAGTTGGTGTTGTTGGATATGCTGATATATTAGGTGCTGTGACCAAACCACCTACAATATTTCCTCCTGCTAATAAATCCTCAGAAGGGAGTGTACATGAAATTCAGTGTTGA 1269 0.4444 MASVLVYHVVGDLTVGKPELVEFHVTETVESAIRAIAESPEGSIPVWKKRSVGVIENSDMRQMRFVGILSSFDIVAFLAKTHCLEDQDKAMKTPVSEVVLSNNSLLRLVDPGTRVIDALDMMKQGVKRLLVPKSIVWKGMSKRFSVIYYGKWPKTPESPSSSSNNLPANVNRNASAFIRDKYCCLSREDVLRFIIGCLGALAPIPLTSIAALGAINPNYSYIESSTPALESSQKVPQDPSAVAVIETTSDGQCKIIGEISAIKLWKCDYISAAWALANLTAGQFVMGVEDNVTSRSLPDFCVNSRSGGDNDLVNGGSRKPKKFSSRSIGFFNKSASHSFGSRSMYRGRSAPLTCKMTSSLAAVMAQMLSHRATHVWVTEDENEEILVGVVGYADILGAVTKPPTIFPPANKSSEGSVHEIQC 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01617 422 ProSiteProfiles CBS domain profile. 344 405 IPR000644 -
Vifa5g01617 422 SUPERFAMILY CBS-domain pair 350 399 IPR046342 -
Vifa5g01617 422 CDD CBS_pair_SF 23 131 - -
Vifa5g01617 422 Gene3D - 322 401 IPR046342 -
Vifa5g01617 422 Gene3D - 8 134 IPR046342 -
Vifa5g01617 422 SUPERFAMILY CBS-domain pair 7 131 IPR046342 -
Vifa5g01617 422 Pfam CBS domain 350 399 IPR000644 -
Vifa5g01617 422 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 7 401 - -
Vifa5g01617 422 SMART cbs_1 19 79 IPR000644 -
Vifa5g01617 422 SMART cbs_1 350 400 IPR000644 -
Vifa5g01617 422 SMART cbs_1 105 151 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01617 Vifa-Chr5 466762165 466763948 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01617 - - gmx:100788752 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01617 5 466762165 466763948 Vifa5g01617 5 466762165 466763948 ECH