Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00781 ATGGTGATGGCACACACCACACCCCTCCACCGTTTATGGCACCCCTTCACTCTCCTCTGTGTGATTCTTCTCCGTGCAACCCCTTCACTCTCAATTGATGCTCACCCACAGGATAAAGCCTCTCTTTTTCTGTTCGGGTCAAGACTGCAAGACCCTTACCAGAGTTTGTCCAGCTGGGCAGGCTCTAACTGCACTTTATGGAGTGGAATCACCTGTGACAACACAACTGGGAGGGTGCTTTCCATCAACCTAACTAGTATGAACCTTTCAGGCCAAATCCACCCCAGTTTGTGCCAGCTTCCGTACCTCAGCAAGGTGGGGTTGTCCCGCAACAACTTCACTTCCCTTCTTCCTGAATGTTTTGGAAATTTGCTCAACCTAAGAGTTATTGATCTCAGCTATAACAGGTTTCACGGTGGGATACCAGATTCTTTCATGAGGCTCAGGCACCTCACTGAGCTTGTTTTGAGTGGGAACCCTGCTCTGGGTGGTCCACTGCCTCCTTGGATTGGAAACTTCTCTACAAATCTGGAAAGGCTACATCTTGGTGTGTGTTCATTCAGTGGGGGCATACCTGAGAGCCTGCTTTACTTGAAGTCCCTCAAGTATTTGGACCTTGGGAACAATCTTTTGTCTGGTAATCTGGTTGGTTTTCATCAGCCTTTGGTTGTGCTCAATCTTGCTTCCAATCAGTTTGCTGGCACTTTGCCTTGTTTTTCAGCTTCAGTTCAGTCTCTTACTGTGTTGAATTTGTCTAACAATTCTATTGTTGGGGGACTGCCTGCTTGTATTGCTTCCTTGCAAGCTTTGACTCATTTGAACCTGTCAGGGAACCATTTGAAGTATAGAATATATCCTAGGCTTGTGTTTTCAGAGAAACTTTTTGTTTTGGACTTGAGTTATAATGATTTTTCTGGTCCTATTCCCAGTAAAATTGCTGAGACTACCGAGAAGCTTGGCCTTGTTCTTCTCGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAAGTTTGCAGGCTTTGTTTCTGTCTCACAATCTTCTCTCTGGAGAAATACCTGCCAGAATTGGAAATTTGACCTATCTTCAGGTCATTGATCTCTCACACAACTCTTTGTCTGGTACCATTCCATTCAGCATTGTTGGGTGCTTTCAGCTGTATGCTCTAATACTGAATAATAACAATCTTTCTGGGGTAATTCAACCGGAGTTTGATGCATTGGATATCTTGAGGATACTTGATATAAGCAACAACAGGTTTTCCGGGGCTATCCCACTCACTCTGGCTGGATGTAAATCTCTCGAGATTGTAGATTTTAGTTCCAACGAGCTTTCTGGATCCTTGAATGATGCAATAACAAAATGGTCAAACCTCAGGTATTTGTCCCTTGCTCAGAATAAGTTCAGTGGAAATTTGCCTAGTTGGTTGTTCACATTTGACGCAATAGAAACAATGGATTTCTCACATAACAAGTTTTCTGGCTTCATCCCTGATATTAATTTTAAGGGTAGCTTGATATTTAACACTAGGAATGTCACTGTTAAAGAGCCATTGGTTGCAGCAAGAACCGTTCAACTGAGAGTTTCAGCTGTTGTTTCTGACAGCAATCAACTCAGTTTCACTTATCATCTATCCTCAATGGTTGGAATCGATTTATCCAGCAACTTGCTCCATGGAGAGATTCCAAGGGGCTTATTTGGTCTAGCTGGCCTAGAATATCTGAATTTGTCATGCAACTTTCTCTATGGACAGCTTCCAGGTCTGCAGAAGATGCAGAGTTTGAAAGCCTTAGATTTGTCACATAATTCCTTGTCAGGACATATTCCAGGAAACATTTCTAGCCTTCAAGATCTGTCCATTTTGAATCTGTCTTACAACTGTTTTTCTGGGTATGTTCCCCAGATGCAAGGTTATGGCAGATTTCCTGGTGCATTTGCTGGAAATCCGGATCTGTGCATGGAATCTTCCAGTGGAGTATGTGATGATGGAAGGACTCGAACTGTGCAAGGAAGTTCTTTCAGGGAAGATAGGATGGAGGGACCAATATCTCTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTCGATTTTGGTGTTGTTGTTCTCTTCTGTTCAGCAAGGGCAAGAAATTACATTCTTCAAACCAAAGTTTGA 2175 0.4285 MVMAHTTPLHRLWHPFTLLCVILLRATPSLSIDAHPQDKASLFLFGSRLQDPYQSLSSWAGSNCTLWSGITCDNTTGRVLSINLTSMNLSGQIHPSLCQLPYLSKVGLSRNNFTSLLPECFGNLLNLRVIDLSYNRFHGGIPDSFMRLRHLTELVLSGNPALGGPLPPWIGNFSTNLERLHLGVCSFSGGIPESLLYLKSLKYLDLGNNLLSGNLVGFHQPLVVLNLASNQFAGTLPCFSASVQSLTVLNLSNNSIVGGLPACIASLQALTHLNLSGNHLKYRIYPRLVFSEKLFVLDLSYNDFSGPIPSKIAETTEKLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWSNLRYLSLAQNKFSGNLPSWLFTFDAIETMDFSHNKFSGFIPDINFKGSLIFNTRNVTVKEPLVAARTVQLRVSAVVSDSNQLSFTYHLSSMVGIDLSSNLLHGEIPRGLFGLAGLEYLNLSCNFLYGQLPGLQKMQSLKALDLSHNSLSGHIPGNISSLQDLSILNLSYNCFSGYVPQMQGYGRFPGAFAGNPDLCMESSSGVCDDGRTRTVQGSSFREDRMEGPISLGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00781 724 Gene3D Ribonuclease Inhibitor 148 219 IPR032675 -
Viun5g00781 724 Gene3D Ribonuclease Inhibitor 37 147 IPR032675 -
Viun5g00781 724 SUPERFAMILY RNI-like 291 637 - -
Viun5g00781 724 SMART LRR_typ_2 598 622 IPR003591 -
Viun5g00781 724 SMART LRR_typ_2 124 158 IPR003591 -
Viun5g00781 724 SMART LRR_typ_2 198 220 IPR003591 -
Viun5g00781 724 SMART LRR_typ_2 414 437 IPR003591 -
Viun5g00781 724 SMART LRR_typ_2 243 266 IPR003591 -
Viun5g00781 724 SMART LRR_typ_2 100 123 IPR003591 -
Viun5g00781 724 SMART LRR_typ_2 342 366 IPR003591 -
Viun5g00781 724 SMART LRR_typ_2 551 575 IPR003591 -
Viun5g00781 724 SMART LRR_typ_2 267 292 IPR003591 -
Viun5g00781 724 Pfam Leucine rich repeat 417 475 IPR001611 GO:0005515
Viun5g00781 724 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Viun5g00781 724 Pfam Leucine rich repeat 222 280 IPR001611 GO:0005515
Viun5g00781 724 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 317 510 - -
Viun5g00781 724 SUPERFAMILY L domain-like 35 310 - -
Viun5g00781 724 FunFam LRR receptor-like serine/threonine-protein kinase EFR 35 316 - -
Viun5g00781 724 Gene3D Ribonuclease Inhibitor 220 669 IPR032675 -
Viun5g00781 724 PRINTS Leucine-rich repeat signature 598 611 - -
Viun5g00781 724 PRINTS Leucine-rich repeat signature 369 382 - -
Viun5g00781 724 FunFam Leucine-rich repeat receptor protein kinase EMS1 546 642 - -
Viun5g00781 724 ProSiteProfiles Leucine-rich repeat profile. 600 622 IPR001611 GO:0005515
Viun5g00781 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 33 432 - -
Viun5g00781 724 Pfam Leucine Rich Repeat 600 622 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00781 Viun-Chr5 4897420 4900697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00781 321 652 Receptor kinase-like Gene Family AT5G46330 27.446 3.91e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00781 - - gmx:100814791 1274.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00781 5 4897420 4900697 Viun5g00781 5 4897420 4900697 ECH