Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0989 ATGGGAATTCAAGGGAATGCTTCTTCCCTCAAACCCTACAAAAACCCTAACCCACATCACTCATTGCCATTGCCACTGTCACTGCTTTTGTTGATACTACTGATCTACCCAAACCCACCTCTTTCTGCTTCTGTTGAACTCAACCCCGATCACCAAGCCTCTCTACTCCTCTTCAAATCATGGCTGCAAGACCCTAACCAAGCATTGTCAACATGGGTTGGGTTCAACTGCACCAGTTGGGCTGGACTCACCTGCCATAATCAAACTGGCTGGCTCATTTCCCTCAACCTAACAGCCATAAACTTGTCAGGACCCCTTCACCCCATGTTGTGCATGATCACCACTCTTGAAACCCTAGTTTTGTCACGTAACAATTTCAATGGTACAATTCCTCAGTGTTTTGGAAATATCTGGGGTTTGAAAACCCTAGACCTTGGTTTTAATAGGTTTTCTGGTGATATACCTGGTACATTTGTGAAACTCAGGCACTTGAGAGAGCTTTTGTTGAATGGAAACCAAGGTTTGGGGGGTTTTTTGCCTAGTTGGATTGGTAATTTCTCGAAAAAGCTTGAGAAACTTGACTTGAGTTCCAACATGTTTAGAGGAAAAATTCCAAAAAGTTTGTTTTACTTGGAATCACTTGAATATTTGGATCTTGGAAACAATTATTTGTTGGGAAATGTTGGTGAGTTTCATCAACCTTTGGTTTATCTAAATCTTGGTTCTAATGAGCTTTCTGGTACTCTGCCTTGTTTTTCGGCATCTGTTGAATCTCTCAGTGTTCTCAATTTGGCAAATAACTCAATCGTGGGAGGAATACCGACATGTATTGCTTCGCTTAGATCATTATCACGGCTGAATCTATCCTCTAATGGGTTAAAATATGAGATATCTCCAAGGCTTGTGTTTTCAGAGAAGCTTCTTGTGCTAGACTTGAGTTTCAATGACTTATCAGGTCCTCTACCGAGTAAAATTGCAGAGACAACAGACAAATCAGGGCTTGTTCTTCTTGACCTTTCACACAATCAAGTCTCTGGTGAAATTCCATCAAGGATTACGGAACTGAAAAGTCTGCAGGCACTGTTTCTTTCTCATAATCTTCTCACCGGTGAAATCCCTGCCAGGATTGGTAATTTGACCTATCTGCAAGTAATTGATCTTTCCCACAACTCGCTTTCAGGTTCCATCCCTTCAAACATTGTTGGGTGTTTTCAGCTCCTTGCTTTGATATTGAATGACAACAATCTTTATGGTGAGATTCAACCAGAGCTTGATGCATTGGATAGTTTGAAAATATTGGATATCAGTAACAACAAGATTTCTGGGGAGATTCCTCTGACGTTGGCTGGTTGTAAATCACTGGAGGTTGTAGACTTCAGCTGCAACAATCTCTCTGGAGCTTTAAATGATGCAATAACCAAATGGCAAAATCTCAGGTTCCTGTCTTTGGCTCGAAATAAATTCAACGGAGCTCTTCCCAATTGGTTGTTTACATTCCAAATGATGCAAGCAATGGATCTTTCAGGCAACAGGTTCTCTGGCTTCATACCGGATGGTAACTTCAACATTAGCTTGAATTTCAACTACAATGACATTGGTCCAAGAACCCCTGAGGAGCCACTGATTACAATCCAAGATCCTGAGATCAAAGCTTTTGCAACTGTTGCTGGTAGTAATGAACTAAGCTTCAACTATGATCTATTTTCAACAGTGGGAATTGATTTATCTGGAAATTTGCTACATGGTGAGATACCTGCAGGTCTCTTTGGACTGCAGGGTTTGGAATACCTGAATTTATCATATAATTTTCTTGATGGTCAGATTCCTGGTTTAGAAAAGATGCAGAGATTAAGGATATTGGATTTGTCGCATAATTCTTTGTCGGGTCAGATTCCAGAAAACATTTCCAGCCTTCGAAATCTGACGCTCTTGAATCTTTCATACAACTGCTTTTCTGGTATTGTTCCAAAGGAGCAGGGCTATTGGAGGTTTCCAGGAGCATTTGCAGGGAATCCAGGATTGTGCGTGGAGTCCTCAGGTGGAAAATGTGAGATGGCAAGTATCCCAACAGTGCCTGCAAAGGCGTTTAAAGAAGAAATGGAGGATGGACCGATTTCAGTTTGGGTGTTTGGTGTAAGTGCCATTGTTAGTTTCTATTCTGGTGTTGTTTCTATGTTTTGTTCGGCTCGAGCTAGAAATTACATTATGCAGACAAAAGTTTAA 2223 0.4107 MGIQGNASSLKPYKNPNPHHSLPLPLSLLLLILLIYPNPPLSASVELNPDHQASLLLFKSWLQDPNQALSTWVGFNCTSWAGLTCHNQTGWLISLNLTAINLSGPLHPMLCMITTLETLVLSRNNFNGTIPQCFGNIWGLKTLDLGFNRFSGDIPGTFVKLRHLRELLLNGNQGLGGFLPSWIGNFSKKLEKLDLSSNMFRGKIPKSLFYLESLEYLDLGNNYLLGNVGEFHQPLVYLNLGSNELSGTLPCFSASVESLSVLNLANNSIVGGIPTCIASLRSLSRLNLSSNGLKYEISPRLVFSEKLLVLDLSFNDLSGPLPSKIAETTDKSGLVLLDLSHNQVSGEIPSRITELKSLQALFLSHNLLTGEIPARIGNLTYLQVIDLSHNSLSGSIPSNIVGCFQLLALILNDNNLYGEIQPELDALDSLKILDISNNKISGEIPLTLAGCKSLEVVDFSCNNLSGALNDAITKWQNLRFLSLARNKFNGALPNWLFTFQMMQAMDLSGNRFSGFIPDGNFNISLNFNYNDIGPRTPEEPLITIQDPEIKAFATVAGSNELSFNYDLFSTVGIDLSGNLLHGEIPAGLFGLQGLEYLNLSYNFLDGQIPGLEKMQRLRILDLSHNSLSGQIPENISSLRNLTLLNLSYNCFSGIVPKEQGYWRFPGAFAGNPGLCVESSGGKCEMASIPTVPAKAFKEEMEDGPISVWVFGVSAIVSFYSGVVSMFCSARARNYIMQTKV* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0989 740 SMART LRR_typ_2 280 304 IPR003591 -
Vvi4g0989 740 SMART LRR_typ_2 379 403 IPR003591 -
Vvi4g0989 740 SMART LRR_typ_2 427 451 IPR003591 -
Vvi4g0989 740 SMART LRR_typ_2 355 378 IPR003591 -
Vvi4g0989 740 SMART LRR_typ_2 638 660 IPR003591 -
Vvi4g0989 740 SMART LRR_typ_2 614 637 IPR003591 -
Vvi4g0989 740 Gene3D Ribonuclease Inhibitor 161 232 IPR032675 -
Vvi4g0989 740 Gene3D Ribonuclease Inhibitor 233 401 IPR032675 -
Vvi4g0989 740 PANTHER OS04G0122200 PROTEIN 567 712 - -
Vvi4g0989 740 PRINTS Leucine-rich repeat signature 614 627 - -
Vvi4g0989 740 PRINTS Leucine-rich repeat signature 382 395 - -
Vvi4g0989 740 ProSiteProfiles Leucine-rich repeat profile. 593 615 IPR001611 GO:0005515
Vvi4g0989 740 SMART LRR_sd22_2 591 613 - -
Vvi4g0989 740 SMART LRR_sd22_2 187 219 - -
Vvi4g0989 740 SMART LRR_sd22_2 614 637 - -
Vvi4g0989 740 SMART LRR_sd22_2 427 459 - -
Vvi4g0989 740 SMART LRR_sd22_2 379 402 - -
Vvi4g0989 740 SUPERFAMILY RNI-like 238 658 - -
Vvi4g0989 740 SUPERFAMILY L domain-like 49 323 - -
Vvi4g0989 740 FunFam LRR receptor-like serine/threonine-protein kinase EFR 48 329 - -
Vvi4g0989 740 Pfam Leucine Rich Repeat 429 451 IPR001611 GO:0005515
Vvi4g0989 740 Pfam Leucine Rich Repeat 382 402 IPR001611 GO:0005515
Vvi4g0989 740 FunFam LRR receptor-like serine/threonine-protein kinase 330 403 - -
Vvi4g0989 740 Gene3D Ribonuclease Inhibitor 402 688 IPR032675 -
Vvi4g0989 740 Gene3D Ribonuclease Inhibitor 50 160 IPR032675 -
Vvi4g0989 740 Pfam Leucine rich repeat 573 627 IPR001611 GO:0005515
Vvi4g0989 740 Pfam Leucine rich repeat 115 173 IPR001611 GO:0005515
Vvi4g0989 740 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0989 Vvi-Chr4 16418701 16420923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0989 9 726 Receptor kinase-like Gene Family AT4G08850 31.275 4.08e-73 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0989 - - vvi:100251384 1404.42