Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3025 ATGATCGGCTTAGAAGATGTGTATAAGGTGATAGTAGCGGTGGTGCCACTCTACTTCGCCCTGTTTTTAGGCTACGGCTCCGTGCGGTGGTGGAGCATCTTCACAAGAGAACAGTGCGATGCGATAAACAAGCTCGTCTGCTACTTCACCTTGCCACTCTTCACCTTCCAATTCACCGCTCACATCGACCCTTTCAAGATGAACTACTTGTTCATCGCCGCTGACACCATCTCCAAGTCCATCATCATCGCGGTTCTCGCCCTTTGGGCCAAGTGCAGCAGCAAAGTGAGCTTCTGCTGGTTCATAACGAGCTTCTCTCTGTGCACTCTCACGAACGCGCTTGTCGTGGGAGTGCCGATGGTGAAGTCCATGTATGGACCACTAGGCGTGGACCTGGTGGTCCAATCTTCGGTCGTGCAGGCGATCATATGGCTCACTTTGCTTCTCTTTGTGATGGAGTTTCGAAGGGCGGGAATTGAGGGCACTACCACCACCACCTTCAACGCTAAACCAAAAATGACGGTTGTTAGCGGCGGTGGTAACTTGCCGGACCGTGAAGATGGAGAAAGGAAAGAAGTAGCTGTTGATGTGGAAGACAATAGTACTGATATTAGGCCTCCTTTATACAAGGTGATGAAGCTTGTGGGGATTAAGCTTGCAGTGAATCCAAATACATATGGTTGTGTCATTGGTATTTCATGGGCTTTCATATCTAACAGGTGGAATTTGGAGATGCCAAGCATGGTTGAAGGGTCTATATTGATCATGTCAAAAGCAGGGATGGGAACTGCCATGTTTAGTATGGGTATTTTCATGGCACTTCAGGACAAGCTGATTTCGTGTGGACCAACTCTGAGTGTGTTTGGTTTGGTTTTAAAGTTCATTGCGGGGCCAGCAGCTATGGCTATTAGTGCTATCGCTGTTGGATTGCATGGTGACGTTTTACGAGTTGCTATCATTCAGGCTGCAGTTCCCCAATCCATCACATCCTTCATTTATGCTAAAGAATACGGGCTACATCCAGAGGTTCTTAGTACTGCGGTGATCTTTGGAATGATTGTTTCGCTTCCTGTCTTAGTTGCCTACTATGCAATATTGGAGTTTATGCATTGA 1113 0.4744 MIGLEDVYKVIVAVVPLYFALFLGYGSVRWWSIFTREQCDAINKLVCYFTLPLFTFQFTAHIDPFKMNYLFIAADTISKSIIIAVLALWAKCSSKVSFCWFITSFSLCTLTNALVVGVPMVKSMYGPLGVDLVVQSSVVQAIIWLTLLLFVMEFRRAGIEGTTTTTFNAKPKMTVVSGGGNLPDREDGERKEVAVDVEDNSTDIRPPLYKVMKLVGIKLAVNPNTYGCVIGISWAFISNRWNLEMPSMVEGSILIMSKAGMGTAMFSMGIFMALQDKLISCGPTLSVFGLVLKFIAGPAAMAISAIAVGLHGDVLRVAIIQAAVPQSITSFIYAKEYGLHPEVLSTAVIFGMIVSLPVLVAYYAILEFMH* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3025 370 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 369 - -
Lja1g3025 370 PANTHER AUXIN EFFLUX CARRIER COMPONENT 5 1 369 - -
Lja1g3025 370 TIGRFAM 2a69: auxin efflux carrier 1 366 IPR014024 -
Lja1g3025 370 Pfam Membrane transport protein 10 363 IPR004776 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3025 Lja-Chr1 36628373 36631976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3025 1 347 Organic Solute Cotransporters AT5G16530 67.147 1.32e-167 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3025 K13947 - gmx:100784879 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3025 1 36628373 36631976 Lja1g3025 1 36628373 36631976 ECH