Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02947 ATGCCCATGAATCGTTTACTCTTTTATCTGATTCTTCTATGTGTAACCCCTTCTCAGTCACTTGATATTAGCATTAACCCACAAGACAAAAAATCTCTTTTATGGTTCAAATCATCACTGCATGACCCTAGCCAGAGTTTATCCAACTGGGTTGGGTCTAATTGTTCTACATGGAATGGAATCACTTGTGACAACACTACTGGTAGAGTGGTTTCAATCAATTTAACAAGTATGAACTTGTCAGGTCAAGTCCACCCTAGTTTTTGTAACCTTTTGTATCTTAACAAGGTGGATTTTTCACACAATAATTTCACTTGCCCTCTACCTGTTTGTTTTGGGAACTTACTTAACCTTAGAGTTATTGATCTTAGTCACAACAGGTTTCATGGTGGAATACCGGATTCTTTCATGAGGCTTAAGGTTCTCACTGAGCTTGTTTTGAATGAGAATCCAGCCTTGGGAGGTTCACTTCCTTTATGGATAGGTAACTTCTCTGCAAATCTTGAAAGGGTTAATCTTGGTTTCTGTTCATTCAGTGGAGGTATACCTGAGAGTTTGCTTAACTTGAAGTCTCTTAAGTATTTGGACCTTGAGAATAATTTATTGTCTGGTAATCTTGTTGTTTTTCGACAACCTATGGTTATTCTCAACCTTGCTTCGAATCAGTTTACAGGTACTTTGCCTTGTTTTGCAGCTTCGATTCAGTCGCTAACTGTGTTGAATTTGTCTAACAATTCTATTGTGGGGGGTTTACCTGCTTGTATTGCTTCCTTTCAAGCTATGACTCATTTGAATCTATCAGGGAACCATTTAAGGTATAGAATATATTCGAGGCTTGTGTTCTCGGAGAAACTTGTTGTTTTGGACTTGAGTAATAATGATTTGTCTGGTCCCATTCCTAGTAAAATTGCAGAGACCACAGAGAAACTTGGCCTTGTTTTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTTTGAAAATCACCGAGTTGAAAAGCTTGCAGGCTTTGTTCCTTTCTCACAATCTTCTTTCAGGAGAAATTCCTTCGAGAATTGGAAATTTGACTTATCTTCAAGTCATTGATCTCTCACACAACTCTCTGTCTGGTACCATTCCGTTTAGCATTGTTGGATGCTTTCAGTTGTATGCTCTTATACTTAATAATAACAATCTTTCTGGCATAATTCAACCGGAGTTCGATGCATTGGATATTTTGAGGATACTAGATATAAGCAACAATAGGTTTTCAGGGGCTATTCCACTCACTTTGGCTGGATGTAAATCTTTGGAGATTGTGGATTTTAGTTCGAATGATCTTTCTGGATCACTGAATGATGCAATAACCAAATGGATGAACCTCAGGTATCTTTCTCTTGCTCGGAACAATTTCGACGGAAACTTGCCTAGTTGGTTGTTCACATTTCAAGCTTTGGAAACAATGGATTTGTCGCACAACAAATTTTCTGGCTTTATACCTGATATTAATTGGAAGAGTAGCTTGTTATTTAACACAAGGGATGTTCCTGTTAAAGAGCCTTTGGTTGAAGCGAGAAGGCTTGAACAAAGAGTTTCAGTAGTTGTTTCTGATAGCAACCAACTCAGTTTCACATATGATCTTTCATCAATGTTCGGAATCGATCTATCCAATAACTTGCTGCATGGAGAGATTCCAAGGGGCTTATTTGGCCTAGCTGGTCTAGAATATCTGAATTTGTCAAGCAATTTTCTCAACGGACAGCTCCCTGGTTTGCAGAAAATGCAAGATTTGAAAGCCATAGATTTGTCGCATAATTCCTTATCGGGACATATCCCGGGAAACATTTCCAGCCTTCAAGATCTAACCATCTTGAATCTGTCTTACAACTGTTTCTCCGGATATGTTCCTGAGAAGCAAGGGTATGGAAGATTTCCCGGTGCATTTGCGGGCAATCCGGATTTATGCTTGGAATCTTTGAGCGGAATATGTGATGATGGGAGGATTCCATCTAATCAAGGCAGTTACTTTAAAGAAGATAAGATGGATGGACCTATATCTGTAGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTATTCTGTTCTGTTCTGCTCGAACAAGAAAGTACATTCTCCAAACCAAGACTTGA 2148 0.3859 MPMNRLLFYLILLCVTPSQSLDISINPQDKKSLLWFKSSLHDPSQSLSNWVGSNCSTWNGITCDNTTGRVVSINLTSMNLSGQVHPSFCNLLYLNKVDFSHNNFTCPLPVCFGNLLNLRVIDLSHNRFHGGIPDSFMRLKVLTELVLNENPALGGSLPLWIGNFSANLERVNLGFCSFSGGIPESLLNLKSLKYLDLENNLLSGNLVVFRQPMVILNLASNQFTGTLPCFAASIQSLTVLNLSNNSIVGGLPACIASFQAMTHLNLSGNHLRYRIYSRLVFSEKLVVLDLSNNDLSGPIPSKIAETTEKLGLVFLDLSHNQFSGEIPLKITELKSLQALFLSHNLLSGEIPSRIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGIIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNDLSGSLNDAITKWMNLRYLSLARNNFDGNLPSWLFTFQALETMDLSHNKFSGFIPDINWKSSLLFNTRDVPVKEPLVEARRLEQRVSVVVSDSNQLSFTYDLSSMFGIDLSNNLLHGEIPRGLFGLAGLEYLNLSSNFLNGQLPGLQKMQDLKAIDLSHNSLSGHIPGNISSLQDLTILNLSYNCFSGYVPEKQGYGRFPGAFAGNPDLCLESLSGICDDGRIPSNQGSYFKEDKMDGPISVGIFFISAFVSFDFGVVILFCSARTRKYILQTKT 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02947 715 PRINTS Leucine-rich repeat signature 357 370 - -
Vivi6g02947 715 PRINTS Leucine-rich repeat signature 285 298 - -
Vivi6g02947 715 FunFam LRR receptor-like serine/threonine-protein kinase EFR 26 307 - -
Vivi6g02947 715 Pfam Leucine rich repeat 383 442 IPR001611 GO:0005515
Vivi6g02947 715 Pfam Leucine rich repeat 215 271 IPR001611 GO:0005515
Vivi6g02947 715 Pfam Leucine rich repeat 94 150 IPR001611 GO:0005515
Vivi6g02947 715 SMART LRR_typ_2 477 500 IPR003591 -
Vivi6g02947 715 SMART LRR_typ_2 542 566 IPR003591 -
Vivi6g02947 715 SMART LRR_typ_2 189 211 IPR003591 -
Vivi6g02947 715 SMART LRR_typ_2 405 428 IPR003591 -
Vivi6g02947 715 SMART LRR_typ_2 115 139 IPR003591 -
Vivi6g02947 715 SMART LRR_typ_2 333 357 IPR003591 -
Vivi6g02947 715 SMART LRR_typ_2 589 613 IPR003591 -
Vivi6g02947 715 SMART LRR_typ_2 234 258 IPR003591 -
Vivi6g02947 715 Gene3D Ribonuclease Inhibitor 151 213 IPR032675 -
Vivi6g02947 715 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Vivi6g02947 715 SUPERFAMILY L domain-like 26 301 - -
Vivi6g02947 715 PANTHER POLYGALACTURONASE INHIBITOR 1 383 501 - -
Vivi6g02947 715 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 308 507 - -
Vivi6g02947 715 Gene3D Ribonuclease Inhibitor 214 661 IPR032675 -
Vivi6g02947 715 Gene3D Ribonuclease Inhibitor 28 149 IPR032675 -
Vivi6g02947 715 FunFam Leucine-rich repeat receptor protein kinase EMS1 537 633 - -
Vivi6g02947 715 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515
Vivi6g02947 715 SUPERFAMILY RNI-like 216 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02947 Vivi-Chr6 116591117 116593862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02947 79 650 Receptor kinase-like Gene Family AT5G46330 32.773 1.15e-67 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02947 - - gmx:100814791 1183.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02947 6 116591117 116593862 Vivi6g02947 6 116591117 116593862 ECH