Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02396 ATGATTGGGTGGGAAGATGTGTACAAAGTAATAGTAGCAGTAGTGCCACTCTACTTTGCATTATTTTTAGGTTATGGTTCTGTGAGGTGGTGGAACATTTTCACAAGGGAACAATGTGATGCAATAAACAAACTAGTTTGTTACTTCACATTACCACTATTCGCCTTCGAGTTCACCGCGCACATCGATCCTTTTAAGATGAACTTCTTATTTATAGGTGCCGATACTCTATCGAAGTTAATCATTGTCGCGGTTATTGCCCTTTGGGCTAAGTGTAGTAGCAAAGGAAGCTATCAATGGTCTATAACAAGTTTCTCTTTGTGTACTCTAACAAATTCTCTTGTTGTTGGAATACCAATGGTGAAACCTATGTATGGAGCCATGGGTGTGGATCTTGTGGTTCAAGCTTCGGTTGTTCAAGCTATTATATGGCTCACTTTGCTTCTATTTGTGTTAGAATTTAGGAGAACGGGAATAGAGGGAACTATAACAACTTTAAAACCAAAGGCTAGTAGTGTTAGTAATGTGATGATAAATGAAGGTGAAGATCAAAGTAAAGATGTGGAAGCAAATAACATAGTAGAATATACAAGTACTAGGCTTCCTTTCATTGAATTGATGAAGCGTGTGTGGCTCAAATTTATAGTGAACCCAAATTCCTATGGTTGTGTCATTGGCATTTCATGGGCTTTCATATCTAATAGGTGGAATTTGGAATTGCCAAGCATGGTAGAGGGGTCTATATTGATCATGTCAAAGGCTGGGACGGGAACCGCTATGTTTAGCATGGGTATTTTCATGGCACTTCAAGAGAAGGTGATTTCGTGTGGACCAAGTTTGACTTTATTTGGTTTGGTTTTAAAGTTCATAGCTGGACCAGCAGCAATGGCTATTAGTGCCATCGTTGTTGGATTGCGTGGTGATGTTTTACGAATTGCCATCATTCAGGCAGCAGTTCCACAATCCATCACATCCTTCATTTTTGCTAAAGAATACGGACTGCATGCTGAGGTTCTTAGCACTGCGGTGATCTTTGGAATGATTGTTTCGCTTCCAATCTTAGTTGCCTACTACGCAATGTTGGAGTTCATTCATTGA 1098 0.3971 MIGWEDVYKVIVAVVPLYFALFLGYGSVRWWNIFTREQCDAINKLVCYFTLPLFAFEFTAHIDPFKMNFLFIGADTLSKLIIVAVIALWAKCSSKGSYQWSITSFSLCTLTNSLVVGIPMVKPMYGAMGVDLVVQASVVQAIIWLTLLLFVLEFRRTGIEGTITTLKPKASSVSNVMINEGEDQSKDVEANNIVEYTSTRLPFIELMKRVWLKFIVNPNSYGCVIGISWAFISNRWNLELPSMVEGSILIMSKAGTGTAMFSMGIFMALQEKVISCGPSLTLFGLVLKFIAGPAAMAISAIVVGLRGDVLRIAIIQAAVPQSITSFIFAKEYGLHAEVLSTAVIFGMIVSLPILVAYYAMLEFIH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02396 365 Pfam Membrane transport protein 10 358 IPR004776 GO:0016020|GO:0055085
Trre13g02396 365 Gene3D - 204 362 IPR038770 -
Trre13g02396 365 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 362 - -
Trre13g02396 365 NCBIfam auxin efflux carrier 1 361 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02396 Trre-Chr13 21557275 21565384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02396 1 342 Organic Solute Cotransporters AT5G16530 69.006 2.79e-171 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02396 K13947 - gmx:100784879 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02396 13 21557275 21565384 Trre13g02396 13 21557275 21565384 ECH