Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00170 ATGGTCATGGGACACACCACACCCCTCCACTGTTTATGGCACCCCTTCACACTCCTCTGTGTGATTCTTCTGTGTGCAACCCCTTCTCACTCAACTGCCCCTTCTCACTCAATTGATTTTCACCCGCAAGACAGATTCTTTCTTTCACTGTTCAAGTCAGGGCTGCAAAACCCCAACCAGAGTTTGCCCAGCTGGGAAGGCTCCAACTGCACTTCATGGAGTGGAATCACCTGTGACAACAGAACTGGGAGGGTGCTTTCCATCAACCTAACTAGTATGAACTTGTCAGGCAAAATCAACCCCAGTTTGTGCCACCTTTCATACCTTAACAAGGTGGGGTTGTCCCACAACAACTTCACATCCCCTCTTCCTGAGTGTTTTGGCAACTTGCTTAACCTAAGAGTCATTGATCTCAGCCACAACAGGCTTCATGGGGGGATACCAGACTCTTTCATGAGGTTCAGGCACCTCACTGAGCTTGTTTTGAGTGGGAACCCTGATTTGGGGGGTCCACTGCCTGCTTGGATTGGTAACTTCTCTGCAAATCTGGAAAGGCTACACCTTGGTTTCTGTTCATTCAGTGGGGGCATACCTGAGAGCTTGCTTTACTTGAAGTCCCTCAAGTATTTGGACCTTGAGAACAATCTCTTGTCTGGTAATCTGGTTGATTTTCAACAGCCTTTGGTTTTGCTCAATCTTGCTTCAAATCAGTTTGCTGGTACTTTGCCTTGCTTTGCAGCTTCAGTTCAGTCTCTAACTGTGTTGAATTTGTCTAACAATTCTATTGTGGGGGGACTACCTGCTTGTATTGCTTCTTTTCAAGCTTTAACTCATTTGAACCTGTCAGGGAACCACTTGAAGTATAGAATATATCCTAGGCTTGTGTTCTCAGAGAAACTTCTTGTTTTGGACTTGAGTAATAATGATTTGTCTGGTCCTATTCCCAGTAAAATTGCTGAGACTACTGAGAAACTTGGCCTTGTTCTTCTTGATCTTTCTCACAATCAGTTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAAGCTTGCAGGCCTTGTTTCTCTCTCACAATCTTCTTTCTGGAGAAATTCCTGCTAGAATTGGAAATTTGACTTATCTGCAGGTCATTGATCTTTCACACAACTCTTTGTCTGGAACCATTCCCTTCAGTATTGTTGGGTGCTTTCAGCTGTATGCTCTAATACTTAATAACAACAATCTTTCTGGTGTAATTCAACCTGAGTTTGATGCGTTGGATATCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCTGGGGCTATCCCACTCACTTTGGCTGGATGCAAATCTCTGGAGATTGTAGATTTTAGTTCCAATGAGCTTTCTGGATCCTTGAATGATGCAATAACCAAATGGACAAACCTCAGGTATTTGTCTCTTGCTCAGAACAAGTTCAGTGGAAATCTGCCTAGTTGGTTGTTCACATTTGACGCAATAGAAATGATGGATTTCTCGCATAACAAGTTTACTGGCTTCATACCTGATATTAATTTTAAGGGTAGCTTAATATTTAACAATAGGAATGTCACTGTTAAAGAGCCATTGGTTGCAGCAAGAAAGGTTCAACTGAGAGTTTCAGCAGTTGTTTCCGATAGCAATCAACTCAGTTTCACTTATGATCTTTCCTCAATGGTTGGAATTGATCTATCCAGCAACTCGCTTCATGGGGAAATTCCAAGGGGCTTATTTGGTCTAGCTGGCCTAGAATATCTGAACTTGTCATGCAACTTTCTTTATGGACAGCTTCCGGGGTTGCAGAAAATGCAGAGTTTGAAAGCCTTGGATTTGTCACATAATTCCTTGTCAGGACATATCCCAGGAAACATTTCTAGCCTTCAAGATCTGTCCATTTTGAATCTGTCTTACAACTGTTTTTCTGGATATGTTCCTCAGAAGCAAGGGTATGGAAGATTTCCTGGTGCATTTGCTGGAAATCCAGATCTCTGCATGGAATCTTCCAGTGGAGTATGTGATGATGGAAGGACTCAATCTGCGCAAGGTAGTTCTTTCAGGGAAGATAGGATGGATGGCCCAATATCTTTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATCTTGGTGTTGTTGTTCTCTTCTGTTCTGCACGGGCAAGAAATTACATTCTCCAAACAAAGGTTTGA 2193 0.4245 MVMGHTTPLHCLWHPFTLLCVILLCATPSHSTAPSHSIDFHPQDRFFLSLFKSGLQNPNQSLPSWEGSNCTSWSGITCDNRTGRVLSINLTSMNLSGKINPSLCHLSYLNKVGLSHNNFTSPLPECFGNLLNLRVIDLSHNRLHGGIPDSFMRFRHLTELVLSGNPDLGGPLPAWIGNFSANLERLHLGFCSFSGGIPESLLYLKSLKYLDLENNLLSGNLVDFQQPLVLLNLASNQFAGTLPCFAASVQSLTVLNLSNNSIVGGLPACIASFQALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNDLSGPIPSKIAETTEKLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWTNLRYLSLAQNKFSGNLPSWLFTFDAIEMMDFSHNKFTGFIPDINFKGSLIFNNRNVTVKEPLVAARKVQLRVSAVVSDSNQLSFTYDLSSMVGIDLSSNSLHGEIPRGLFGLAGLEYLNLSCNFLYGQLPGLQKMQSLKALDLSHNSLSGHIPGNISSLQDLSILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCMESSSGVCDDGRTQSAQGSSFREDRMDGPISLGIFFISAFVSFDLGVVVLFCSARARNYILQTKV 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00170 730 SUPERFAMILY RNI-like 297 643 - -
Pumo5g00170 730 Gene3D Ribonuclease Inhibitor 43 176 IPR032675 -
Pumo5g00170 730 Pfam Leucine Rich Repeat 182 202 IPR001611 GO:0005515
Pumo5g00170 730 Pfam Leucine Rich Repeat 606 628 IPR001611 GO:0005515
Pumo5g00170 730 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 327 525 - -
Pumo5g00170 730 SUPERFAMILY L domain-like 41 316 - -
Pumo5g00170 730 PRINTS Leucine-rich repeat signature 604 617 - -
Pumo5g00170 730 PRINTS Leucine-rich repeat signature 375 388 - -
Pumo5g00170 730 Pfam Leucine rich repeat 423 481 IPR001611 GO:0005515
Pumo5g00170 730 Pfam Leucine rich repeat 108 166 IPR001611 GO:0005515
Pumo5g00170 730 Pfam Leucine rich repeat 228 286 IPR001611 GO:0005515
Pumo5g00170 730 SMART LRR_typ_2 348 372 IPR003591 -
Pumo5g00170 730 SMART LRR_typ_2 557 581 IPR003591 -
Pumo5g00170 730 SMART LRR_typ_2 273 298 IPR003591 -
Pumo5g00170 730 SMART LRR_typ_2 604 628 IPR003591 -
Pumo5g00170 730 SMART LRR_typ_2 204 226 IPR003591 -
Pumo5g00170 730 SMART LRR_typ_2 420 443 IPR003591 -
Pumo5g00170 730 SMART LRR_typ_2 249 272 IPR003591 -
Pumo5g00170 730 SMART LRR_typ_2 130 164 IPR003591 -
Pumo5g00170 730 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 36 439 - -
Pumo5g00170 730 Pfam Leucine rich repeat N-terminal domain 42 79 IPR013210 -
Pumo5g00170 730 Gene3D Ribonuclease Inhibitor 226 675 IPR032675 -
Pumo5g00170 730 ProSiteProfiles Leucine-rich repeat profile. 606 628 IPR001611 GO:0005515
Pumo5g00170 730 Gene3D Ribonuclease Inhibitor 177 225 IPR032675 -
Pumo5g00170 730 FunFam Leucine-rich repeat receptor protein kinase EMS1 552 648 - -
Pumo5g00170 730 FunFam LRR receptor-like serine/threonine-protein kinase EFR 41 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00170 Pumo-Chr5 4644238 4647338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00170 87 717 Miscellaneous Gene Families AT3G53240 31.806 5.03e-74 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00170 - - gmx:100814791 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00170 5 4644238 4647338 Pumo5g00170 5 4644238 4647338 ECH