Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00626 ATGCTGATGGCACACACCACACCCCTCCACCGTTTATGCCACCCCTTCACTCTCCTCTCTGTGATTCTTCTCTGTGCAACCCCTTCACTCTCAATTGATGTTCACCTACAAGATAAAGCCTCTCTTCTTCTGTTCAGGTCAAGACTGCAAGACCCTTACCAGAGTTTGTCCAACTGGGCAGGCTCCAACTGCACTTCATGGACTGGAATCACCTGTGACAACAGAACTGGGAGGGTGCTTTCCATCAACCTAACTAGTATGAACCTTTCAGGCCAAATCCACCCCAGTTTGTGCCAGCTTTCGTACCTCAGCAAGGTGGGGTTGTCCCACAACAACTTCACTTCCCTTCTTCCTGAATGTTTTGGAAATTTGCTCAACCTAAGAGTTATTGATCTCAGCTATAACAGGTTTCACGGTGGGATACCAGACTCTTTCATGAGGCTCAGGCACCTCACTGAGCTTGTTTTGAGTGGGAACCATGGTTTGGGTGGTCCACTGCCTGCTTGGATTGGAAACTTCTCTACAAATCTGGAAAGGCTACATCTTGGTGTGTGTTCATTCCGTGGGGGCATACCTGAGAGCCTTCTTTACTTGAAGTCCCTCAAGTATTTGGACCTTGGGAACAATCTCTTGTCTGGTAATCTTGTTGGTTTTCAGCAGCCTTTGGTTGTGCTCAATCTTGCTTCCAATCAGTTTGCTGGTACTTTGCCTTGCTTTTCAGCTTCAGCTCAGTCTCTGACTGTGTTGAATTTGTCTAATAATTCTATTGTTGGGGGACTGCCTGCTTGTATTGCTTCCTTGCAAGCTTTGACTCATTTGAACCTGTCAGCGAACCATTTGAAGTATAGAATATATCCTAGGCTTATGTTTTCATTGAAACTTCTTGTTTTGGACTTGAGTTATAATGATTTTTCTGGTCCTATTCCTAGTAAAATTGCTGAGACTACCGAGAAACTTGTTGGCCTTGTTCTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTGTGAGAATTACCGAGTTGAAAACTTTGCAGGCCTTGTTTCTCTCTCACAATATTCTCTCTGGAGAAATTCCTGCCAGAATTGGAAATTTAACCTATCTTCAGGTCATTGATTTCTCACACAACGCTTTGTCTGGTACCATTCCATTCAGCATTGTTGGGTGCTTTCAGCTGTATGCTCTAATACTGAATAACAACAATCTTTCTGGGGTAATTCAACCGGAGTTTGATGCATTGGATATCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCCGGGGCTATCCCACTCACTCTGGCAGGATGTAAATCTCTCGAGATTGTAGATTTTAGTTCCAATGAGCTTTCTGGATCCTTGAATGATGCAATAACGAAATGGTCAAACCTCAGGTATTTGTCCCTTGCTCAGAATAAGTTCAGTGGAAATTTGCCTAGTTGGTTGTTCACATTTGACGCAATAGAAACAATGGATTTCTCACATAACAAGTTTTCTGGCTTCATCCCTGATATTAATTTTAAGGGTAGCTTGATATTTAACACTAGGAATGTCACTTTTAAAGAGCCATTGTTTGCAGCAAAAAACGTTCAACTGAGATTTTCAGATGTTGTTTCTGATAGCAATCAACTCACTTTCACTTATCATCTATCCTCAATGGTTGGAATCGATTTATCCAGCAACTTGCTCCATGGAGAGATTCCAAGGGGCTTATTTGGTCTGGCTGGCCTAGAATATCTGAATTTGTCATGCAACTTTCTCTATGGACAGCTTCCAGGTCTGCAGAAAATGCAGAGTTTGAAAGCCTTAGATTTGTCACATAATTCCTTGTCAGGGCATATTCCAGGAAACATTTCTAGCCTTCAAGATCTGTCCATTTTGAATCTGTCTTACAACTGTTTTTCTGGGTATGTTCCCCAGAAGCAAGGATATGGGAGATTTCCTGGTGCATTTGCTGGAAACCCTGATCTGTGCATGGAATCTTCCAGTGGCGTATGTGATGATGGAAGGACTCAATCTGTGCAAGGAAGTTCTTTCAGGGAAGATAGGACGGAGGGACCAATATCTCTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTGTTCTCTTCTGTTCAGCAAGGGCGAGAAATTACATTCTTCAAACCAAAGTTTGA 2178 0.4238 MLMAHTTPLHRLCHPFTLLSVILLCATPSLSIDVHLQDKASLLLFRSRLQDPYQSLSNWAGSNCTSWTGITCDNRTGRVLSINLTSMNLSGQIHPSLCQLSYLSKVGLSHNNFTSLLPECFGNLLNLRVIDLSYNRFHGGIPDSFMRLRHLTELVLSGNHGLGGPLPAWIGNFSTNLERLHLGVCSFRGGIPESLLYLKSLKYLDLGNNLLSGNLVGFQQPLVVLNLASNQFAGTLPCFSASAQSLTVLNLSNNSIVGGLPACIASLQALTHLNLSANHLKYRIYPRLMFSLKLLVLDLSYNDFSGPIPSKIAETTEKLVGLVLLDLSHNQFSGEIPVRITELKTLQALFLSHNILSGEIPARIGNLTYLQVIDFSHNALSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWSNLRYLSLAQNKFSGNLPSWLFTFDAIETMDFSHNKFSGFIPDINFKGSLIFNTRNVTFKEPLFAAKNVQLRFSDVVSDSNQLTFTYHLSSMVGIDLSSNLLHGEIPRGLFGLAGLEYLNLSCNFLYGQLPGLQKMQSLKALDLSHNSLSGHIPGNISSLQDLSILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCMESSSGVCDDGRTQSVQGSSFREDRTEGPISLGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00626 725 FunFam Leucine-rich repeat receptor protein kinase EMS1 547 643 - -
Vimu6g00626 725 FunFam LRR receptor-like serine/threonine-protein kinase EFR 35 313 - -
Vimu6g00626 725 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 314 521 - -
Vimu6g00626 725 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 16 506 - -
Vimu6g00626 725 SUPERFAMILY RNI-like 290 638 - -
Vimu6g00626 725 Pfam Leucine Rich Repeat 601 623 IPR001611 GO:0005515
Vimu6g00626 725 Gene3D Ribonuclease Inhibitor 146 219 IPR032675 -
Vimu6g00626 725 PRINTS Leucine-rich repeat signature 322 335 - -
Vimu6g00626 725 PRINTS Leucine-rich repeat signature 599 612 - -
Vimu6g00626 725 Gene3D Ribonuclease Inhibitor 220 670 IPR032675 -
Vimu6g00626 725 Pfam Leucine rich repeat 222 280 IPR001611 GO:0005515
Vimu6g00626 725 Pfam Leucine rich repeat 418 476 IPR001611 GO:0005515
Vimu6g00626 725 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Vimu6g00626 725 SMART LRR_typ_2 599 623 IPR003591 -
Vimu6g00626 725 SMART LRR_typ_2 124 158 IPR003591 -
Vimu6g00626 725 SMART LRR_typ_2 415 438 IPR003591 -
Vimu6g00626 725 SMART LRR_typ_2 267 292 IPR003591 -
Vimu6g00626 725 SMART LRR_typ_2 319 343 IPR003591 -
Vimu6g00626 725 SMART LRR_typ_2 198 220 IPR003591 -
Vimu6g00626 725 SMART LRR_typ_2 100 123 IPR003591 -
Vimu6g00626 725 SMART LRR_typ_2 552 576 IPR003591 -
Vimu6g00626 725 ProSiteProfiles Leucine-rich repeat profile. 601 623 IPR001611 GO:0005515
Vimu6g00626 725 Gene3D Ribonuclease Inhibitor 37 145 IPR032675 -
Vimu6g00626 725 SUPERFAMILY L domain-like 36 310 - -
Vimu6g00626 725 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00626 51 645 Receptor kinase-like Gene Family AT5G46330 32.847 7.18e-75 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00626 - - gmx:100814791 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00626 6 7429118 7431295 Vimu6g00626 6 7429118 7431295 ECH