Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01616 ATGAATCGTTTTTGCCATTTACTAACACTCTTTTATCTGATTCTTCTATGTGCAACTGCAACCCCTTCTCAGTCAATTGAGATCAGCCCACAAGACAAAAAATCTCTTTTATGGTTTAAATCATCTCTGCATGACCCTAGCCAGAGTTTATCCAACTGGGTCAAATTCACCCTAGTTTTTGTAACCTTTTGTTTCTTAACAAGTCACAACAGGTTTCATGGTGGAATACCGGAGTCTTTCATGAGGCTTAAGCTTCTCACTGAGCTTGTTTTGAATGAGAATCCACTCTTGGGAGGTTTACTTCCTTTATGGATAGGTAACTTCTCTGCGAATCTTGAAAGAGTTAATCTTGGTTTCTGTTCTTTCAGTGGAGGTATACCTGAGAGTTTACTTTACTTGAAGTCTCTTAAGTATTTGGACCTTGAGAGCAATTTATTGTCGGGTAATCTTGTTGTTTTTCAACAACCTATGGTTATTCTCAACCTTGCTTCCAATCAGTTTACAGGTACTTTGCCTTGTTTTGCAGCTTCAGTTCAGTCATTAACTGTGTTGAATTTGTCTAACAATTCTATTGTGGGGGGTTTACCTGCTTGTATTGCTTCCTTTCAAGCTTTGACTCATTTGAATCTTTCGGGGAACCATTTAAAGTATAGAATATATTCGAGGCTCGTGTTCTCGGAGAAACTTGTTGTTTTGGACTTGAGTAATAATGATTTGTCGGGTCCTATTCCTAGTAAAATTGCAGAGACCACAGAGAAACTTGGCCTTGTTTTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTTTGAAAATCACCGAGTTGAAAAGCTTGCAGGCTTTGTTCCTTTCTCACAATCTTCTTTCTGGAGAAATTCCTTCTAGGATTGGAAATTTGACTTATCTTCAAGTCATTGATCTCTCACACAACTCTCTGTCTGGTACCATTCCGTTTAGCATTGTTGGGTGCTTTCAGTTGTATGCTCTTATACTTAATAACAACAATCTTTCTGGCATAATTCAACCTGAGTTTGATGCGTTGGATATTTTGAGGATACTAGATATAAGCAACAATAGGTTTTCGGGGGCTATTCCACTCACTTTGGCTGGATGTAAATCCTTGGAGATTGTGGATTTTAGTTCCAATGATCTTTCTGGATCATTGAATGATGCAATAACCAAATGGATGAATCTCAGGTATCTTTCTCTTGCTCGGAACAAATTTGATGGAAACTTGCCTAGTTGGTTGTTCACATTTCAAGCTTTAGAAACAATGGATTTGTCACACAACAAGTTTTCTGGCTTTATACCTGATGTTAATTGGAAGAGTAGCTTATTATTTAACACAAGGGATGTTACTGCTAAAGAAGAACCTTTTGTTGAAGCGAGAAGGGTTGAACCAAGAGTTTCGGTAGTTGTTTCTGATAGCAACCAACTCAGTTTCACATACGATCTTTCATCAATGTTCGGGATCGATCTATCCAATAATTTGCTGCATGGAGAGATTCCGAGGGGCTTATTTGGCCTAGCTGGTCTAGAATATCTGAATTTGTCGTGCAATTTTCTCAATGGACAGCTCCCTGGTTTGCAGAAAATGCAAAGTTTGAAAGCCATAGATTTGTCGCATAATTCCTTATCGGGACATATCCCGGGAAACATTTCCAGCCTTCAAGATCTAAGCATCTTGAATCTGTCTTACAACTGTTTCTCAGGATATGTTCCTGAGAAGCAAGGGTATGGAAGATTTCCCGGTGCATTTGCTGGCAATCCAGATTTATGCTTGGAGTCTTTGAGTGGAATATGTGATGATGGAAGGATTGCATCTAATCAAGGCAGTTATTTTAAAGAAGATAAGATGGATGGACCTATATCTGTAGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTATTCTATTCTGTTCTGCTCGGACAAGAAAGTACATTCTCCAAACCAAAGCTTGA 1983 0.3843 MNRFCHLLTLFYLILLCATATPSQSIEISPQDKKSLLWFKSSLHDPSQSLSNWVKFTLVFVTFCFLTSHNRFHGGIPESFMRLKLLTELVLNENPLLGGLLPLWIGNFSANLERVNLGFCSFSGGIPESLLYLKSLKYLDLESNLLSGNLVVFQQPMVILNLASNQFTGTLPCFAASVQSLTVLNLSNNSIVGGLPACIASFQALTHLNLSGNHLKYRIYSRLVFSEKLVVLDLSNNDLSGPIPSKIAETTEKLGLVFLDLSHNQFSGEIPLKITELKSLQALFLSHNLLSGEIPSRIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGIIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNDLSGSLNDAITKWMNLRYLSLARNKFDGNLPSWLFTFQALETMDLSHNKFSGFIPDVNWKSSLLFNTRDVTAKEEPFVEARRVEPRVSVVVSDSNQLSFTYDLSSMFGIDLSNNLLHGEIPRGLFGLAGLEYLNLSCNFLNGQLPGLQKMQSLKAIDLSHNSLSGHIPGNISSLQDLSILNLSYNCFSGYVPEKQGYGRFPGAFAGNPDLCLESLSGICDDGRIASNQGSYFKEDKMDGPISVGIFFISAFVSFDFGVVILFCSARTRKYILQTKA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01616 660 SMART LRR_typ_2 202 227 IPR003591 -
Vifa5g01616 660 SMART LRR_typ_2 349 372 IPR003591 -
Vifa5g01616 660 SMART LRR_typ_2 178 201 IPR003591 -
Vifa5g01616 660 SMART LRR_typ_2 277 301 IPR003591 -
Vifa5g01616 660 SMART LRR_typ_2 534 558 IPR003591 -
Vifa5g01616 660 SMART LRR_typ_2 421 444 IPR003591 -
Vifa5g01616 660 SMART LRR_typ_2 133 155 IPR003591 -
Vifa5g01616 660 SMART LRR_typ_2 487 511 IPR003591 -
Vifa5g01616 660 Pfam Leucine rich repeat 327 386 IPR001611 GO:0005515
Vifa5g01616 660 Pfam Leucine rich repeat 159 215 IPR001611 GO:0005515
Vifa5g01616 660 Gene3D Ribonuclease Inhibitor 156 255 IPR032675 -
Vifa5g01616 660 Gene3D Ribonuclease Inhibitor 29 155 IPR032675 -
Vifa5g01616 660 FunFam Leucine-rich repeat receptor protein kinase EMS1 482 578 - -
Vifa5g01616 660 Gene3D Ribonuclease Inhibitor 256 609 IPR032675 -
Vifa5g01616 660 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 343 438 - -
Vifa5g01616 660 SUPERFAMILY L domain-like 67 150 - -
Vifa5g01616 660 PRINTS Leucine-rich repeat signature 304 317 - -
Vifa5g01616 660 PRINTS Leucine-rich repeat signature 534 547 - -
Vifa5g01616 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 228 652 - -
Vifa5g01616 660 FunFam Highly similar to receptor-like protein kinase 155 324 - -
Vifa5g01616 660 SUPERFAMILY RNI-like 160 576 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01616 106 647 Miscellaneous Gene Families AT3G53240 32.893 2.37e-63 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01616 - - gmx:100814791 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01616 5 466511197 466513356 Vifa5g01616 5 466511197 466513356 ECH