Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00883 ATGGCATCGGTGTTTCTGTATCATGTGGTGGGGGATCTGACGGTGGGGAAGCCTGAGCTGGTGGAGTTCCATGATACTGAGACGGTGGAGAGTGCGATTAAGGCAATAGGGGAATCCCCTGAAGGCAGCATACCCATTTGGAAGAAGGGATCTCATGTGGGTGCTAACATGTTTGAGAAAAGTGATATGAGACAGCAGAGGTTTGTTGGCATGCTTAGTTCCTTCGACATAGTTGCGTTTTTGGCTAAGAGTCAGTGTTTGGAGGATCAGGATAAGGCCTTGAAGACACCTGTTTCTGAGGTTGTTGTTCCAAACAATTCTCTACTCAGGCTGGTTGACCCTGCAACAAGGTTGATAGATGCACTGGACATGATGAAGCAAGGTGTGAAACGTTTGCTTGTTCCAAAGAGTGTAGTATGGAAAGGCATGAGTAAGCGATTCTCAGTTATCTACTATGGCAAGTGGCTCAAGAATGCTGAAACTCCTAGCAGCAGCAGCAACAATCTACCTGCAAACATGAATAGGAACCCCTCATCTTCCGGCACATCTATCCGTGATAAGTACTGTTGTCTCTCTAGAGAAGATGTTCTCCGGTTTATCATTGGTTGTCTTGGAGCTTTAGCTCCACTTCCACTCACTTCCATTGCTGCCCTTGGAGCAATTAATGCAAACTTCAGCTATATTGAATCTTCCACACCAGCCATTGAAGCAACTCAAAAGCTTACACAAGATGCAGTTGCAGTAACAGAAAACTCATCAGATGGCCAATGTAAGATCATTGGAGAAATTTCTGCATGTAAGTTATGGAAATGTGATTACTTATCTGCAGCATGGGCTTTAGCCAATCTTTCAGCAGGACAATTTGTTATGGGAGTTGAAGATAATGTTACATCAAGATCACTGCCTGAGTTCAGTGTAAATTCAACAGCTGGAGCTAATGGTTTAGTCAATGGTGGTGTTTCAAGAAAACCAAAGAAGTTCAGTAGCAGGAGTATTGGATTCTTCAGTAATTCTACAAGTCATAGCTTTGGTTCCAGAAGCATGTATAGGGGTAGAAGTGCACCTCTTACATGTAAAATTACTAGTTCATTGGCTGCAGTTATGGCTCAGATGCTATCTCACAGGGCAACTCATGTTTGGGTGATTGAAGATGAGAGTGATGATGTTTTAGTTGGTGTGGTGGGATATGTTGATATTTTAGCTGCTGTAACCAAACCTCCTACAACCTTCATTCCTGCTAATAGATCTACAGAGGGGTTTGGAAATGAAATTCAGTGTTGA 1281 0.4309 MASVFLYHVVGDLTVGKPELVEFHDTETVESAIKAIGESPEGSIPIWKKGSHVGANMFEKSDMRQQRFVGMLSSFDIVAFLAKSQCLEDQDKALKTPVSEVVVPNNSLLRLVDPATRLIDALDMMKQGVKRLLVPKSVVWKGMSKRFSVIYYGKWLKNAETPSSSSNNLPANMNRNPSSSGTSIRDKYCCLSREDVLRFIIGCLGALAPLPLTSIAALGAINANFSYIESSTPAIEATQKLTQDAVAVTENSSDGQCKIIGEISACKLWKCDYLSAAWALANLSAGQFVMGVEDNVTSRSLPEFSVNSTAGANGLVNGGVSRKPKKFSSRSIGFFSNSTSHSFGSRSMYRGRSAPLTCKITSSLAAVMAQMLSHRATHVWVIEDESDDVLVGVVGYVDILAAVTKPPTTFIPANRSTEGFGNEIQC. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00883 426 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 407 - -
Seca2g00883 426 MobiDBLite consensus disorder prediction 162 181 - -
Seca2g00883 426 Gene3D - 327 405 IPR046342 -
Seca2g00883 426 SMART cbs_1 19 82 IPR000644 -
Seca2g00883 426 SMART cbs_1 108 154 IPR000644 -
Seca2g00883 426 SMART cbs_1 354 404 IPR000644 -
Seca2g00883 426 Gene3D - 6 138 IPR046342 -
Seca2g00883 426 SUPERFAMILY CBS-domain pair 5 134 IPR046342 -
Seca2g00883 426 SUPERFAMILY CBS-domain pair 353 404 IPR046342 -
Seca2g00883 426 ProSiteProfiles CBS domain profile. 348 409 IPR000644 -
Seca2g00883 426 Pfam CBS domain 354 403 IPR000644 -
Seca2g00883 426 CDD CBS_pair_SF 23 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00883 Seca-Chr2 13629469 13632225 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00883 - - gmx:100788752 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00883 2 13629469 13632225 Seca2g00883 2 13629469 13632225 ECH