Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02398 ATGCCCCTTTATAGTTTTTGCCATTTACTCACACTAATTTGTTTAATTCTTCACTGTGTTACTTCTTCTCACTCAATTGATATTCACCCACAAGACAAAAAATCTCTTTTATGGTTCAAATCATCTCTGCATGACCCTAATCAGAGTATATCCAACTGGGTTGGTTCCAATTGCAGTACATGGGTTGGAATCACATGTGAAAACACTACTGGTAGAGTGATTTCAATCAACCTAAATAGTATGAATTTGTCAGGTCAAATTCACACCAATTTTTGTAACCTTTTCTATCTTAACAAGGTTGATTTTTCACATAACAATTTCACATGCCCTCTACCTGTTTGTTTTGGAAACTTACTTAACCTTAGTGTTATTGATCTTAGTCACAACAGGTTTCATGGTGGAATACCAAACTCTTTCATGAGGCTTAAGGTTCTCACTGAGCTTGTTTTGAATGATAATCCATTTTTGGGAGGTTCACTGCCTTTTTGGTTAGGTAACTTCTCTGCAAATCTTGAAAGAATCCATCTTGGTTTCTGTTCACTTAGTGGAGGTATACCTGAAAGCTTGTTTTACTTGAAGTCTCTTAAGTATTTGAACCTTGGAAACAATCTTTTGTCTGGTAATCTTGTTGATTTTCAACAGCCTTTGGTTTTTCTCAATCTTGCTTCCAATCAGTTTACAGGTACTTTGCCTTGTTTTGCAGCTTCAGTTCAGTCTTTAACTGTGTTGAATTTGTCTAACAATTCTATTGTTGGGGGTTTACCTGCTTGTATTGCTTCTTTTCAAGCTTTGACTCATTTGAACCTATCGAGGAACCATTTGAAATATAGAATATATTCGAGGCTTGTGTTCTCGGAGAAACTTGTTGTTTTGGACTTGAGTAATAATGATTTGTCTGGTCCTATTCCTAGTAAAATTGCTGAGACCACTGAGAAACTTGGCCTTGTTTTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCATTGAAAATTACTGAGTTGAAAAGCCTGCAGGCTTTGTTCCTTTCTCACAATCTTCTTTCTGGAGAAATTCCTTCTAGAATTGGAAACTTGACTTATCTTCAAGTCATTGATCTCTCACACAACTCTTTGTCTGGTACCATTCCATTTAGTATTGTTGGGTGCTTTCAGTTGTATGCTCTAGTACTTAATAACAACAATCTTTCTGGTGTGATTCAACCGGAGTTCGACGCATTGGATATCTTGAGGATACTAGATATAAGCAACAATAGGTTTTCTGGTGCTATTCCACTCACTTTGGCTGGTTGTAAATCTTTGGAGATTGTAGATTTTAGTTCCAATGATCTTTCTGGACCATTGAACGATGCGATAACTAAATGGACAAACCTCAGGAATGTTACTGTCAAAGAGCCCTTGGTTGAAGCAACCACCTTTCAACCAAGAGTTTCAGTAGTTGGTTCTGACAGCAACCAACTCAGTTTCACATATGATCTTTCATCGATGTTCGGAATCGACCTATCCAATAACTTGTTGCATGGAGAGATTCCAAGGGGCTTATTTGGCCTCGCTGGCCTAGAATATCTGAATTTGTCATACAATTTTCTCAATGGACAGCTTCCTGGTTTGCAGAAAATGCAGAGTTTGAGAGCTATAGACTTGTCGCATAATTCTCTATCAGGACATATCCCGGGAAACATTTCCGGCCTTCAAGATTTAACCATCTTGAATCTGTCTTACAACTGTTTCTCTGGATATGTTCCTCAGAAGCAAGGTTATGGTAGATTTCCTGGTGCATTTGCTGGAAACCCGGATTTATGCTTGGAATCTTCGAGTGGAATATGTGATGGAAGGATTCCATCAAATCAAGGCAGTTATTTTAGGGAAGATAAGATGGATGGACCTATATCTGTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTGTTCTATTCTGTTCTGCTCGAACAAGAAAATACATTCTCCAAACCAAAGCTTGA 2001 0.3773 MPLYSFCHLLTLICLILHCVTSSHSIDIHPQDKKSLLWFKSSLHDPNQSISNWVGSNCSTWVGITCENTTGRVISINLNSMNLSGQIHTNFCNLFYLNKVDFSHNNFTCPLPVCFGNLLNLSVIDLSHNRFHGGIPNSFMRLKVLTELVLNDNPFLGGSLPFWLGNFSANLERIHLGFCSLSGGIPESLFYLKSLKYLNLGNNLLSGNLVDFQQPLVFLNLASNQFTGTLPCFAASVQSLTVLNLSNNSIVGGLPACIASFQALTHLNLSRNHLKYRIYSRLVFSEKLVVLDLSNNDLSGPIPSKIAETTEKLGLVFLDLSHNQFSGEIPLKITELKSLQALFLSHNLLSGEIPSRIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALVLNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNDLSGPLNDAITKWTNLRNVTVKEPLVEATTFQPRVSVVGSDSNQLSFTYDLSSMFGIDLSNNLLHGEIPRGLFGLAGLEYLNLSYNFLNGQLPGLQKMQSLRAIDLSHNSLSGHIPGNISGLQDLTILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCLESSSGICDGRIPSNQGSYFREDKMDGPISVGIFFISAFVSFDFGVVVLFCSARTRKYILQTKA 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02398 666 Pfam Leucine Rich Repeat 543 565 IPR001611 GO:0005515
Trre13g02398 666 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 211 - -
Trre13g02398 666 Gene3D Ribonuclease Inhibitor 314 614 IPR032675 -
Trre13g02398 666 Pfam Leucine rich repeat 219 274 IPR001611 GO:0005515
Trre13g02398 666 Pfam Leucine rich repeat 386 445 IPR001611 GO:0005515
Trre13g02398 666 Pfam Leucine rich repeat 97 154 IPR001611 GO:0005515
Trre13g02398 666 SUPERFAMILY L domain-like 29 304 - -
Trre13g02398 666 SMART LRR_typ_2 192 214 IPR003591 -
Trre13g02398 666 SMART LRR_typ_2 494 518 IPR003591 -
Trre13g02398 666 SMART LRR_typ_2 541 565 IPR003591 -
Trre13g02398 666 SMART LRR_typ_2 336 360 IPR003591 -
Trre13g02398 666 SMART LRR_typ_2 261 286 IPR003591 -
Trre13g02398 666 SMART LRR_typ_2 408 431 IPR003591 -
Trre13g02398 666 SMART LRR_typ_2 237 260 IPR003591 -
Trre13g02398 666 PRINTS Leucine-rich repeat signature 363 376 - -
Trre13g02398 666 PRINTS Leucine-rich repeat signature 541 554 - -
Trre13g02398 666 SUPERFAMILY L domain-like 285 584 - -
Trre13g02398 666 FunFam Leucine-rich repeat family protein 314 613 - -
Trre13g02398 666 FunFam LRR receptor-like serine/threonine-protein kinase EFR 29 310 - -
Trre13g02398 666 Gene3D Ribonuclease Inhibitor 29 313 IPR032675 -
Trre13g02398 666 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02398 Trre-Chr13 21585076 21587229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02398 171 619 Receptor kinase-like Gene Family AT2G25790 32.985 2.09e-47 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02398 - - gmx:100798103 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02398 13 21585076 21587229 Trre13g02398 13 21585076 21587229 ECH