Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02661 ATGTTGATGGTGATGGCACACACCACACCCGTCCACTGTTTATGGCACCCCTTCACTCTCCTCTGTGTGGTTCTTCTCTGTGCAACCCCTTCACTCTCAATTGATGTTCACCTACAAGACAGAGCCTCTCTTCTTCTGTTCAGGTCAAGGCTGCAAGACCCCTACCAGAGTTTGTCCAACTGGGCAGGCTCCAACTGCACTTCATGGAGTGGAATCACCTGTGACAACAGAACTGGGAGGGTGCTTTCCATCAACCTAACTAGTATGAACCTGTCAGGCCAAATCCACCCCAGTTTGTGCCAGCTTTCATACCTCAGCAAGGTGGGGTTGTCCCACAACAACTTCACTTCCCTCCTTCCTGAATGTTTTGGAAATTTGCTCAACCTAAGAGCTATTGATCTCAGCCATAACAGGTTTCATGGTGGGATACCGGACTCTTTCATGAGGCTCAGGCACCTCACTGAGCTTGTTTTGAGCGGGAACCCTGGTTTGGGTGGTCCACTGCCTGCTTGGATTGGAAACTTCTCTACAAATCTGGAAAGGCTACATCTTGGTGTCTGTTCATTCACTGGGGACATACCTGAGAGCTTGCTTTACTTGAAGTCCCTCAAGTATTTGGACCTTGAGAACAATCTCTTGTCTGGTAATCTGGTTGGTTTTCAGCAGCCTCTGGTTTTGCTCAATCTTGCTTCCAATCAGTTTGCTGGTACTTTGCCTTGCTTTTCAGCTTCAGTTCAGTCTCTAACTGTGTTGAATTTGTCTAACAATTCTATTGTGGGGGGACTGCCTGCTTGTATTGCTTCCTTGCAAGCTTTAACTCATTTGAACCTGTCAGGGAACCATTTGAGGTATAGAATATATCCTAGGCTTGTGTTTTCAGAGAAACTTCTTGTTTTGGACTTGAGTTATAATGATTTTTCTGGTCCTATTCCCAGTAAAATTGCTGAGACTACCGAGAAACTTGGCCTTGTTCTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAAGTTTGCAGGCCTTGTTTCTCTCTCACAATCTTCTCTCTGGAGAAATTCCTGCCAGAATTGGAAATTTGACCTATCTTCAGGTCATTGATCTCTCACACAACTCTTTGTCTGGTACCATTCCATTCAGCATTGTTGGGTGCTTTCAGCTGTATGCTCTAATACTGAATAACAACAATCTTTCTGGTGTAATTCAACCGGAGTTTGATGCATTGGATATCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCCGGGGCTATCCCACTCACTCTGGCTGGATGTAAATCTCTCGAGATTGTAGATTTTAGTTCCAATGAGCTTTCTGGATCCTTGAATGATGCAATAACGAAATGGTCAAACCTCAGGTATTTGTCCCTTGCTCAGAATAAGTTCAGTGGAAATTTGCCTAGTTGGTTGTTCACATTTGACGCAATAGAAACAATGGATTTCTCACATAACAAGTTTTCTGGCTTCATCCCTGATATTAATTTTAAGGGCGGCTTGATATTTAACAGTAGGAATGTCACTGTTGAAGAGCCGTTGGTTGCAGCAAGAAATGTTCAACTGAGAGTTTCAGCTGTTGTTTCTGATAGCAATCAACTCAGTTTTACTTATGATCTATCCTCAATGGTTGGAATCGATCTATCCAGCAACTTGCTCCACGGAGAGATTCCAAGGGGCTTATTTGGTCTAGCGGGCCTTGAATATCTGAATTTGTCATGCAACTTTCTCTATGGACAGCTTCCAGGTCTGCAGAAAATGCAGAGTTTGAAAGCCTTAGATTTGTCACATAATTCCTTGTCAGGACATATCCCAGGAAACATTTCTAGCCTTCAAGATCTGTCCATTTTGAATCTGTCTTACAACTGTTTTTCTGGGTATGTTCCCCAGAAGCAAGGATATGGGAGATTTCCTGGTGCATTTGCTGGAAATCCGGATCTGTGCATGGAATCTTCCAGTGGAGTATGTGATGATGGAAGGACTCAATCTGTGCAAGGAAGTTCTTTCAGGGAAGATAGGATGGAGGGACCAATATCTCTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTGTTCTCTTCTGTTCAGCAAGGGCAAGAAATTACATTCTTCAAACCAAAGTTTGA 2181 0.4305 MLMVMAHTTPVHCLWHPFTLLCVVLLCATPSLSIDVHLQDRASLLLFRSRLQDPYQSLSNWAGSNCTSWSGITCDNRTGRVLSINLTSMNLSGQIHPSLCQLSYLSKVGLSHNNFTSLLPECFGNLLNLRAIDLSHNRFHGGIPDSFMRLRHLTELVLSGNPGLGGPLPAWIGNFSTNLERLHLGVCSFTGDIPESLLYLKSLKYLDLENNLLSGNLVGFQQPLVLLNLASNQFAGTLPCFSASVQSLTVLNLSNNSIVGGLPACIASLQALTHLNLSGNHLRYRIYPRLVFSEKLLVLDLSYNDFSGPIPSKIAETTEKLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWSNLRYLSLAQNKFSGNLPSWLFTFDAIETMDFSHNKFSGFIPDINFKGGLIFNSRNVTVEEPLVAARNVQLRVSAVVSDSNQLSFTYDLSSMVGIDLSSNLLHGEIPRGLFGLAGLEYLNLSCNFLYGQLPGLQKMQSLKALDLSHNSLSGHIPGNISSLQDLSILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCMESSSGVCDDGRTQSVQGSSFREDRMEGPISLGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02661 726 ProSiteProfiles Leucine-rich repeat profile. 602 624 IPR001611 GO:0005515
Phco3g02661 726 SMART LRR_typ_2 416 439 IPR003591 -
Phco3g02661 726 SMART LRR_typ_2 600 624 IPR003591 -
Phco3g02661 726 SMART LRR_typ_2 245 268 IPR003591 -
Phco3g02661 726 SMART LRR_typ_2 102 125 IPR003591 -
Phco3g02661 726 SMART LRR_typ_2 344 368 IPR003591 -
Phco3g02661 726 SMART LRR_typ_2 200 222 IPR003591 -
Phco3g02661 726 SMART LRR_typ_2 269 294 IPR003591 -
Phco3g02661 726 SMART LRR_typ_2 553 577 IPR003591 -
Phco3g02661 726 Gene3D Ribonuclease Inhibitor 221 671 IPR032675 -
Phco3g02661 726 PRINTS Leucine-rich repeat signature 600 613 - -
Phco3g02661 726 PRINTS Leucine-rich repeat signature 371 384 - -
Phco3g02661 726 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Phco3g02661 726 Pfam Leucine rich repeat 224 282 IPR001611 GO:0005515
Phco3g02661 726 Pfam Leucine rich repeat 419 477 IPR001611 GO:0005515
Phco3g02661 726 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 317 509 - -
Phco3g02661 726 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 19 507 - -
Phco3g02661 726 Pfam Leucine rich repeat N-terminal domain 38 75 IPR013210 -
Phco3g02661 726 SUPERFAMILY RNI-like 292 639 - -
Phco3g02661 726 Gene3D Ribonuclease Inhibitor 37 172 IPR032675 -
Phco3g02661 726 FunFam LRR receptor-like serine/threonine-protein kinase EFR 37 316 - -
Phco3g02661 726 Pfam Leucine Rich Repeat 602 624 IPR001611 GO:0005515
Phco3g02661 726 SUPERFAMILY L domain-like 38 312 - -
Phco3g02661 726 Gene3D Ribonuclease Inhibitor 173 220 IPR032675 -
Phco3g02661 726 FunFam Leucine-rich repeat receptor protein kinase EMS1 548 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02661 Phco-Chr3 53173109 53175289 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02661 3 53173109 53175289 Phco3g02661 3 53173109 53175289 ECH