Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00628 ATGATAGGGTTGGAAGATGTGTACAAAGTGATAGTGGCAGTGGTGCCACTGTATGTTGCTCTAGTGTTAGGGTATGGTTCAGTGAAGTGGTGGAAGATCTTCAGTAGGGAGCAATGTGATGCAATAAACAAGCTAGTATGTTACTTCACTTTGCCACTCTTTACTTTTGAGTTCACTGCTCACATCGACCCTTTCAAAATGAACTTTTCGTTCATAGCTGCAGACACCATATCAAAGTTCATCATCATCCTGGTGCTTGCCCTCTGGGCCAAGTGCACTGCCAAGGGGAGTTTCTGCTGGTCTATAACGAGCTTCTCTTTGTGCACTCTCACCAACGCTCTTGTTGTTGGTATTCCAATGGTGAAGCCCATGTATGGAGCCCTTGGTGAGGACCTAGTCGTTCAGTCTTCCGTGGTGCAGGCCATCATATGGCTCACTTTGCTTCTCTTTGTCTTGGAGTTTCGGAGAACAGGAATTGAAGGCACCACCACCACCACCACCACCTTTAAACCTAGATCAAAAGCAATGGTTGTTGACACTAATAATTTGACAGGTGAAGGTGGTGGAGGAGGGAAAGATGTGGAGGAAAATACTGTAGCTATTGATGTTAAAGATGAGTTGCTGTTAGAAGAAACTGTTAGCAGTAGGATTCCATTTTGCAAGTTGATGAAACTTGTGTGGCTCAAACTTGTAATGAACCCAAACTCCTACGGCTGTGTCATTGGCATTTCCTGGGCCTTCATATCTAACAGGTGGAATTTGGAGATGCCAAGTATGTTGGAAGGGTCTATACAGATCATGTCAAAGGCAGGGACGGGAACTGCCATGTTTAGTATGGGTATTTTCATGGCACTTCAGGATAACTTGATTGCTTGTGGACCAAGTCTGACTGTATTTGGTTTGGTTTTAAAGTTCATTGCGGGCCCTGCAGCCATGGCTATCGGTGCCATCGCCGTAGGATTGCACGGTGATGTCTTGAGAGTTGCCATCATTCAGGCTGCTGTCCCACAATCCATCACATCCTTCATTTTTGCTAAAGAATATGGATTGCATCCAGAGGTTCTCAGCACTGCGGTGATCTTTGGCATGATTGTTTCACTTCCCATCTTAGTTGCTTACTATGCAATATTGGAGTTCATACATTGA 1146 0.4485 MIGLEDVYKVIVAVVPLYVALVLGYGSVKWWKIFSREQCDAINKLVCYFTLPLFTFEFTAHIDPFKMNFSFIAADTISKFIIILVLALWAKCTAKGSFCWSITSFSLCTLTNALVVGIPMVKPMYGALGEDLVVQSSVVQAIIWLTLLLFVLEFRRTGIEGTTTTTTTFKPRSKAMVVDTNNLTGEGGGGGKDVEENTVAIDVKDELLLEETVSSRIPFCKLMKLVWLKLVMNPNSYGCVIGISWAFISNRWNLEMPSMLEGSIQIMSKAGTGTAMFSMGIFMALQDNLIACGPSLTVFGLVLKFIAGPAAMAIGAIAVGLHGDVLRVAIIQAAVPQSITSFIFAKEYGLHPEVLSTAVIFGMIVSLPILVAYYAILEFIH 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00628 381 NCBIfam auxin efflux carrier 1 377 IPR014024 -
Vimu6g00628 381 Gene3D - 226 378 IPR038770 -
Vimu6g00628 381 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 378 - -
Vimu6g00628 381 Pfam Membrane transport protein 10 374 IPR004776 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00628 Vimu-Chr6 7454954 7457419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00628 1 358 Organic Solute Cotransporters AT5G16530 66.760 1.04e-171 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00628 K13947 - gmx:100784879 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00628 6 7454954 7457419 Vimu6g00628 6 7454954 7457419 ECH