Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0974 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03531 Bva04g03452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g3034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0975 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03532 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g1644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0976 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03533 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g1645 . Mal1g1253 . . . . . . . Mtr1g2779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g1634 . . . Tsu01g03253 . . . . . . . . . . . .
Vvi4g0977 . . . . Adu04g02526 . . . . . . . . . . . . . . . Arst4g03356 . . . . . . Bva04g03455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01486 . Lasa3g02039 . . . . . . . . . Lja1g3033 . . . Mepo3g02236 . Mesa25g01983 . . . . . Phac8g00815 . Phco3g02655 . . . . . Pste5g01233 . . . . . . . Pvu8g0569 . . . Seca2g00896 . Spst1g01143 . . . . . . . Trre13g02405 . . . . . Vifa5g01609 . Vimu6g00620 . Viun5g00787 . Vivi6g02941 . . .
Vvi4g0978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g3029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0979 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva04g03457 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g1647 . Mal1g1252 . . . . . . . Mtr1g2778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g1636 . . . Tsu01g03252 . . . . . . . . . . . .
Vvi4g0980 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0981 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0982 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0983 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0974 Chr4 16085347 16105741 -
Bva Bva13g03531 Chr13 23919992 23921900 -
Bva Bva04g03452 Chr04 27399046 27401312 -
Lja Lja1g3034 Chr1 36722464 36723525 +
Vvi Vvi4g0975 Chr4 16120243 16122398 -
Bva Bva13g03532 Chr13 23922580 23925062 -
Lja Lja5g1644 Chr5 17808130 17811262 -
Vvi Vvi4g0976 Chr4 16164450 16185486 +
Bva Bva13g03533 Chr13 23926152 23932338 +
Lja Lja5g1645 Chr5 17812753 17818569 +
Mal Mal1g1253 Chr1 15917325 15923744 -
Mtr Mtr1g2779 Chr1 38994266 39001413 -
Tpr Tpr1g1634 Chr1 15435340 15441403 +
Tsu Tsu01g03253 Chr01 40300766 40307193 -
Vvi Vvi4g0977 Chr4 16186696 16227869 +
Adu Adu04g02526 Chr04 111523506 111532148 +
Arst Arst4g03356 Chr4 111503012 111511592 +
Bva Bva04g03455 Chr04 27406969 27412287 +
Lapu Lapu1g01486 Chr1 27665353 27673505 -
Lasa Lasa3g02039 Chr3 520398965 520406723 +
Lja Lja1g3033 Chr1 36704154 36712974 -
Mepo Mepo3g02236 Chr3 32053403 32063071 +
Mesa Mesa25g01983 Chr25 24462601 24471794 -
Phac Phac8g00815 Chr8 5310821 5318830 -
Phco Phco3g02655 Chr3 53122396 53130745 +
Pste Pste5g01233 Chr5 7992060 7992739 -
Pvu Pvu8g0569 Chr8 5012297 5020204 -
Seca Seca2g00896 Chr2 13800618 13801232 -
Spst Spst1g01143 Chr1 13783527 13795857 +
Trre Trre13g02405 Chr13 21617765 21626512 -
Vifa Vifa5g01609 Chr5 466358315 466364810 +
Vimu Vimu6g00620 Chr6 7371346 7379170 +
Viun Viun5g00787 Chr5 4942548 4949586 -
Vivi Vivi6g02941 Chr6 116537735 116548452 +
Vvi Vvi4g0978 Chr4 16238416 16251987 +
Lja Lja1g3029 Chr1 36672032 36681006 +
Vvi Vvi4g0979 Chr4 16253492 16258484 +
Bva Bva04g03457 Chr04 27417971 27421783 -
Lja Lja5g1647 Chr5 17827455 17831136 -
Mal Mal1g1252 Chr1 15908453 15912135 +
Mtr Mtr1g2778 Chr1 38984990 38989418 +
Tpr Tpr1g1636 Chr1 15454430 15456577 -
Tsu Tsu01g03252 Chr01 40294449 40298400 +
Vvi Vvi4g0980 Chr4 16320401 16320930 +
Vvi Vvi4g0981 Chr4 16329867 16330786 +
Vvi Vvi4g0982 Chr4 16332377 16334957 -
Vvi Vvi4g0983 Chr4 16349852 16350977 +