Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3027 ATGTTCATGGAAAACTCCATGCCCCACCATCGTTTTTACCATCTACTCACACTCCTCTGTTTGATTTTGCTGTGTGTAACACCCTCCAACTCAATTGATATCCACCCACAAGACAAAGCCTCACTTTTGAAGTTCAGGGCATGGCTGCAATACCCCAACCAGAGTTTGCCCAACTGGGTAGGTTCCAACTGCTCTACATGGAATGGAATCACCTGTGACAACAGCACTGGCAGGGTGATTTCCATTAACCTGACCAACATGAACTTGTCAAGCCAAATCCACCCCAGTTTCTGTAACCTTTCATATCTCAACAAGGTGGTTTTGTCCCACAATAACTTCACATGCCCTCTACCTGTTTGTTTTGGGAACTTGCTTAACCTTAAAGCCATTGATCTCAGCCACAACCAGTTTCATGGTGGAATACCAGACTCTTTCATGAGGCTGAAACACCTTACTGAGCTTGTTTTGAGTGGGAATCCAGATTTGGGTGGTCCACTGCCTTCTTGGATTGGTAATTTTTCTGCAAATTTGGAAAGGCTTCATCTTGGTTTCAGTTCACTCAGTGGGGTTATACCTGAGAGCTTGCTTTACTTGAAGTCTCTCAAGTATTTGGACCTTGAAGATAATCTCTTGTCTGGTAATCTGGTTGATTTTCACCAACCTTTGGTTTTTCTCAATCTTGCTTCCAATCAGTTATCAGCTTTGACTCATCTGAACCTATCAGGGAACCACTTGAAGTATAGAATATATCCTAGGCTTGTGTTCTCAGAGAAACTTCTTGTTTTGGATTTGAGTAACAATGATTTTTCTGGTCCTATTCCCAGTAAAATTGCAGAGACAACAGAGAAACTTGGCCTTGTTCTTCTTGACCTTTCCCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAAGTTTGCAGGCCTTGTTCCTTTCTCACAATCTTCTTTCAGGAGAAATTCCTGCTAGAATTGGAAACTTGACTTATCTTCAAGTTATTGATCTCTCACACAACTCTTTGTCTGGTACCATTCCATTCAGTATTGTTGGATGCTTTCAGCTGTATGCTTTAATACTTAATAACAACAATCTTTCTGGTGTGATTCAACCTGAGTTTGATGCATTGGATATCTTGAGGATACTGGATATAAGCAACAACGGGTTTTCTGGTGCTATTCCACTCACTTTGGCTGGATGCAAATCTCTGGAGATTGTAGATTTTAGGTCCAATGATCTTTCTGGATCCTTGAATGATGCAATAACCAAGTGGACAAACCTCAGGTATCTTTCTCTTGCTGAGAACAAGTTCAGTGGCGATTTGCCTAGTTGGTTGTTCACGTTCGAATCAATAGAAACAATGGATTTCTCTCACAACAAGTTTTCTGGCTTCATACCTGATATTAATTTTAAGGGTAGCTTAATATTTAACACAAGGAATGTCACTGTTAAGGAGCCACTGGCTGCACCAAAAGAGTTTCAACTCAGAGTTTCAGCTGTTGTTTCTGATAGCAATCAACTTAGTTTCACTTATGATCTCTCATCAATGGTTGGAATCGATCTATCCAGCAACTTGCTACATGGGGAGATTCCAAGGGGCTTGTTTGGCCTAACTTCCCTAGAATACATGAATTTGTCTTACAATTTTCTAGATGGACAGCTTCCTGGTTTGCAGAAAATGCAGAGTTTGAAAGCCTTGGATTTGTCACATAATTCTCTGTCAGGACATATCCCAGGAAACATTTCTACCCTTCAAGGTCTTGCGGTCTTGAATCTATCTTACAACTGCTTTTCTGGATATGTTCCCCAGAAGCAGGGGTATGGAAGATTTCCTGGTGCATTTGCTGGGAATCCAGATTTATGCTTGGAATCTTCAAATGGAATATGTGATGGTGGAAGGACTCCATCCGCGCGAGGAACATCTTTTGGGGAAGATGGGATGGATGGACCAATATCTGTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGAGTTGTTGTTCTCTTCTGTTCTGCTCGAGCAAGAAACTACATTCTCCATACTAAAGTTTGA 2070 0.4097 MFMENSMPHHRFYHLLTLLCLILLCVTPSNSIDIHPQDKASLLKFRAWLQYPNQSLPNWVGSNCSTWNGITCDNSTGRVISINLTNMNLSSQIHPSFCNLSYLNKVVLSHNNFTCPLPVCFGNLLNLKAIDLSHNQFHGGIPDSFMRLKHLTELVLSGNPDLGGPLPSWIGNFSANLERLHLGFSSLSGVIPESLLYLKSLKYLDLEDNLLSGNLVDFHQPLVFLNLASNQLSALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNDFSGPIPSKIAETTEKLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNGFSGAIPLTLAGCKSLEIVDFRSNDLSGSLNDAITKWTNLRYLSLAENKFSGDLPSWLFTFESIETMDFSHNKFSGFIPDINFKGSLIFNTRNVTVKEPLAAPKEFQLRVSAVVSDSNQLSFTYDLSSMVGIDLSSNLLHGEIPRGLFGLTSLEYMNLSYNFLDGQLPGLQKMQSLKALDLSHNSLSGHIPGNISTLQGLAVLNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCLESSNGICDGGRTPSARGTSFGEDGMDGPISVGIFFISAFVSFDFGVVVLFCSARARNYILHTKV* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3027 689 Pfam Leucine Rich Repeat 565 585 IPR001611 GO:0005515
Lja1g3027 689 Gene3D Ribonuclease Inhibitor 222 633 IPR032675 -
Lja1g3027 689 PRINTS Leucine-rich repeat signature 334 347 - -
Lja1g3027 689 PRINTS Leucine-rich repeat signature 563 576 - -
Lja1g3027 689 PANTHER 3, PUTATIVE-RELATED 16 227 - -
Lja1g3027 689 Gene3D Ribonuclease Inhibitor 37 147 IPR032675 -
Lja1g3027 689 Gene3D Ribonuclease Inhibitor 148 221 IPR032675 -
Lja1g3027 689 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 227 - -
Lja1g3027 689 SUPERFAMILY L domain-like 35 278 - -
Lja1g3027 689 SMART LRR_typ_2 307 331 IPR003591 -
Lja1g3027 689 SMART LRR_typ_2 198 220 IPR003591 -
Lja1g3027 689 SMART LRR_typ_2 516 540 IPR003591 -
Lja1g3027 689 SMART LRR_typ_2 232 257 IPR003591 -
Lja1g3027 689 SMART LRR_typ_2 563 587 IPR003591 -
Lja1g3027 689 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Lja1g3027 689 PANTHER 3, PUTATIVE-RELATED 231 689 - -
Lja1g3027 689 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 231 689 - -
Lja1g3027 689 SUPERFAMILY RNI-like 237 602 - -
Lja1g3027 689 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3027 Lja-Chr1 36656694 36659976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3027 11 624 Receptor kinase-like Gene Family AT4G08850 30.531 9.92e-70 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3027 - - gmx:100814791 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3027 1 36656694 36659976 Lja1g3027 1 36656694 36659976 ECH