Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00886 ATGGTCATGGGACACCCCATGCCCCTCTATGGTTTTTGGCATCTACTCTCACTTCTCTGTTTGATTCTTCTTTGTGCAACCCCTTCTCACTCAATTGACATTCACCCACAAGATAAAGCCTCGCTTTTGATGTTCACTTCATCACTACAAGACCCCAACCAGAGCTTGTCCAACTGGGTAGGGTCCAACTGCACTACATGGACTGGAATCACCTGTGACAACATAACTGGTAGGGTGATTTCTATCAACCTCACCAGTATGAACTTGTCAGGCCAAATCCACCCCAGTTTGTGTAACCTTTCATACCTTAACAAGGTGGGTTTGTCTCACAACAGCTTCACTTCCCCTCTTCCTGTCTGTTTTGGAAACTTGCTTAACCTCCGAGCCATTGATCTTAGCCACAACCGGTTTCATGGTGGAATACCAGGCTCTTTCATGAGGCTTAGGCACCTTACTGAACTTGTTTTGAATGGGAACCCTGCTTTGGGAGGTCCACTTCCTGCTTGGATAGGTAACTTCTCTGCAAATCTGGAAAGGCTTCATCTTGGTTTCTGTTCATTCAGTGGGGGTATACCTGAGAGCTTACTTTACTTGAAGTCTCTCAAGTATTTGGACCTTGAAAACAATCTCTTGTCTGGTAATCTGGTTGATTTTCACCAACCTTTGGTTTTTCTCAATCTTGCTTCCAATCAGTTTGCAGGTACTTTGCCTTGTTTTGCAGCTTCAGTTCAGTCTCTAACTGTGTTAAATCTTTCTAACAATTCTATTGTGGGAGGATTACCTGCTTGTATTGCTTCCTTTGAAGCTTTGACTCATCTAAACCTATCAGGGAACCACTTGAAGTATAGAATATATCCAAGGCTTGTGTTCTCAGAGAAACTTCTTGTTTTGGACTTGAGTTATAATGATTTATCTGGTCCTATTCCCAGTAAAATTGCAGAGACAACAGAGAAACTTGGCCTTGTTCTTCTTGACCTTTCTCACAACCAGTTCTCTGGTGAAATTCCTGTGAAAATTACTGAATTGAAAAGCTTGCAGGCATTGTTCCTTTCTCACAATCTTCTTTCAGGAGAAATTCCTGCTAGAATTGGAAATTTGACCTATCTACAAGTAATTGATCTCTCACACAACTCTTTGTCTGGTACCATTCCATTCAGCATTGTTGGGTGCTTTCAGCTGTATGCTCTGATACTTAATAACAACAATCTTTCTGGTGTAATTCAACCGGAGTTTGATGCATTGGATATCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCTGGGGCCATCCCACTTACTTTGGCTGGATGTAAATCTCTGGAGATTGTAGATTTTAGCTCCAATGAGCTTTCTGGATCCTTGAATGATGCAATAACCAAGTGGACAAACCTCAGGTATCTTTCTCTTGCTCGGAACAAGTTCAGTGGAACTTTGCCTAGTTGGTTGTTCACATTTGAAGCAATAGAAACAATGGATTTCTCTCACAACAAGTTTTCTGGCTTCATACCTGATATTAATTTTAAGGGTAACTCAATATTCAACACAAGGAATGTCACTTTTAAAGAGCCATTGGTTGCAGCAAGAAATGTTCAACTGAGAGTTTCAGTGGTTGTTTCTGATAGCAATCAGCTCAGTTTCACTTATGATCTTTCATCAATGGTTGGAATTGATCTATCAAACAACTTGCTACATGGGGAGATTCCAAGGGGCTTATTTGGCCTAGCTGGCCTAGAATATCTGAATTTGTCATGCAATTTTCTCGATGGACAGCTTCCTGGTTTACAGAAAATGCAGAGTTTGAAAGCCTTAGATTTATCACATAATTCCCTGTCAGGACATATCCCAGGAAACATTTCTACCCTTCAAGATCTGTCTGTGTTGAATCTGTCTTACAACTGTTTTTCTGGATATGTCCCCCAGAAGCAAGGGTATGGAAGATTTCCTGGTGCATTTGCTGGAAATCCAGATTTATGCTTGGAATCTACCAATGGAATATGTGCTGATGGAAGGACTCCATCAGTGCAAACCAGGTCTTTTAGAGAAGATAGGATGGATGGACCAATATCTGTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTGTTCTCTTCTGTTCTGCCCGGGCAAGAAATTACATTCTCCAAACTAAAGTTTGA 2175 0.4097 MVMGHPMPLYGFWHLLSLLCLILLCATPSHSIDIHPQDKASLLMFTSSLQDPNQSLSNWVGSNCTTWTGITCDNITGRVISINLTSMNLSGQIHPSLCNLSYLNKVGLSHNSFTSPLPVCFGNLLNLRAIDLSHNRFHGGIPGSFMRLRHLTELVLNGNPALGGPLPAWIGNFSANLERLHLGFCSFSGGIPESLLYLKSLKYLDLENNLLSGNLVDFHQPLVFLNLASNQFAGTLPCFAASVQSLTVLNLSNNSIVGGLPACIASFEALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSYNDLSGPIPSKIAETTEKLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWTNLRYLSLARNKFSGTLPSWLFTFEAIETMDFSHNKFSGFIPDINFKGNSIFNTRNVTFKEPLVAARNVQLRVSVVVSDSNQLSFTYDLSSMVGIDLSNNLLHGEIPRGLFGLAGLEYLNLSCNFLDGQLPGLQKMQSLKALDLSHNSLSGHIPGNISTLQDLSVLNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCLESTNGICADGRTPSVQTRSFREDRMDGPISVGIFFISAFVSFDFGVVVLFCSARARNYILQTKV. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00886 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 28 433 - -
Seca2g00886 724 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Seca2g00886 724 Pfam Leucine rich repeat 417 475 IPR001611 GO:0005515
Seca2g00886 724 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Seca2g00886 724 Pfam Leucine rich repeat 225 280 IPR001611 GO:0005515
Seca2g00886 724 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 314 523 - -
Seca2g00886 724 SUPERFAMILY L domain-like 35 310 - -
Seca2g00886 724 SMART LRR_typ_2 598 622 IPR003591 -
Seca2g00886 724 SMART LRR_typ_2 414 437 IPR003591 -
Seca2g00886 724 SMART LRR_typ_2 243 266 IPR003591 -
Seca2g00886 724 SMART LRR_typ_2 267 292 IPR003591 -
Seca2g00886 724 SMART LRR_typ_2 198 220 IPR003591 -
Seca2g00886 724 SMART LRR_typ_2 342 366 IPR003591 -
Seca2g00886 724 SMART LRR_typ_2 462 486 IPR003591 -
Seca2g00886 724 SMART LRR_typ_2 551 575 IPR003591 -
Seca2g00886 724 Gene3D Ribonuclease Inhibitor 222 669 IPR032675 -
Seca2g00886 724 PRINTS Leucine-rich repeat signature 598 611 - -
Seca2g00886 724 PRINTS Leucine-rich repeat signature 369 382 - -
Seca2g00886 724 SUPERFAMILY RNI-like 291 637 - -
Seca2g00886 724 Pfam Leucine Rich Repeat 600 620 IPR001611 GO:0005515
Seca2g00886 724 Pfam Leucine Rich Repeat 176 196 IPR001611 GO:0005515
Seca2g00886 724 FunFam Leucine-rich repeat receptor protein kinase EMS1 546 642 - -
Seca2g00886 724 FunFam LRR receptor-like serine/threonine-protein kinase EFR 35 313 - -
Seca2g00886 724 Gene3D Ribonuclease Inhibitor 146 221 IPR032675 -
Seca2g00886 724 Gene3D Ribonuclease Inhibitor 37 145 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00886 Seca-Chr2 13658859 13661033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00886 321 652 Receptor kinase-like Gene Family AT5G46330 27.989 6.55e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00886 - - gmx:100814791 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00886 2 13658859 13661033 Seca2g00886 2 13658859 13661033 ECH