Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0640 . . . . Adu04g00416 . . . . Aev01g0750 . Ahy11g0669 . Aip01g00658 . . . . . . Arst4g00655 . Bach7g01213 . . . . . . . . . . . . Dod05g0797 . . . . . Gma18g00799 . . . . . . . . . Lal3g0864 . . . . . . . . Lapu6g01618 . Lasa1g01253 . . . . . . . . . . Lja6g2450 . . Mepo6g00946 . Mesa5g03722 . . . . . Phac6g00621 . Phco11g00836 . . . Psa5g4015 . Pste2g02589 . Pte19g00495 . . . . . Pvu6g1531 . . . . . Spst6g01214 . . . . Sto10g0485 . . . . . . . . . . Vimu2g01130 . . . Vivi4g03249 . . .
Vvi19g0641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa5g4014 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0642 . . . . . . . . . . . . . . . . . . Apr2g0208 Apr9g1761 . . . . . . Bva12g02720 . . . . Cca09g01117 . . . . . . . . . . Gma02g02752 Gma14g00185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal8g0420 . . . . . . . Mtr5g3311 . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g1907 . . . . . . . . . . . . . . . . . . .
Vvi19g0643 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g02719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa2g0290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0645 . . . . Adu01g00175 . . Aed4g2464 . . . . . . . . . . . . Arst1g00257 . . . . . Bva12g02718 . Car02g02066 Car05g01032 . Cca09g01118 Dere04g1579 . . . . . . . Gma08g02988 . . . Gso8g2645 . . . Lal18g1577 . . . . . Lan2g1321 . . . . . Lapu6g02581 . . . . . . . . . . . . . . . Mepo3g04628 . Mesa9g01799 . Mibi05g1700 . . . . . Phco11g01978 . . . . Psa2g0289 . . . . . . Pumo1g00861 . Pvu6g0488 . Rops11g02749 . Seca6g03018 . Spst6g02005 . . Ssu9g0975 Sto9g1908 . . . . . . . Vian6g00393 . Vifa1g03323 . Vimu2g02503 . Viun6g00809 . . . . Vra6g0226
Vvi19g0646 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0648 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g02717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa2g0287 . . . . . . . . . . . . . . . . . . Sto9g1911 . . . . . . . . . . . . . . . . . . .
Vvi19g0649 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g02716 . . . . . . . . . . . . . Gma08g02991 Gma18g00798 . . Gso8g2648 Gso8g2648 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa2g0286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu04g00416 Chr04 4901795 4904310 +
Arst Arst4g00655 Chr4 4880554 4883052 +
Bach Bach7g01213 Chr7 22583903 22586584 -
Lapu Lapu6g01618 Chr6 16051624 16054535 +
Lasa Lasa1g01253 Chr1 104572354 104574847 -
Lja Lja6g2450 Chr6 53433003 53436054 +
Mepo Mepo6g00946 Chr6 9912516 9914954 +
Mesa Mesa5g03722 Chr5 64978075 64979659 -
Phac Phac6g00621 Chr6 11129128 11133455 -
Phco Phco11g00836 Chr11 6134634 6137171 +
Pste Pste2g02589 Chr2 26064850 26071236 +
Pte Pte19g00495 Chr19 3993038 3996466 +
Pvu Pvu6g1531 Chr6 26052939 26055888 -
Spst Spst6g01214 Chr6 11119479 11121884 +
Vimu Vimu2g01130 Chr2 7464486 7466983 +
Vivi Vivi4g03249 Chr4 146796202 146799138 -
Vvi Vvi19g0640 Chr19 6960177 6964683 +
Adu Adu04g00416 Chr04 4901795 4904310 +
Aev Aev01g0750 Chr01 7159232 7165974 -
Ahy Ahy11g0669 Chr11 11055761 11057028 +
Aip Aip01g00658 Chr01 10359435 10363830 +
Arst Arst4g00655 Chr4 4880554 4883052 +
Bach Bach7g01213 Chr7 22583903 22586584 -
Dod Dod05g0797 Chr05 12720086 12723368 +
Gma Gma18g00799 Chr18 8974942 8978688 +
Lal Lal3g0864 Chr3 8243368 8250619 -
Lapu Lapu6g01618 Chr6 16051624 16054535 +
Lasa Lasa1g01253 Chr1 104572354 104574847 -
Lja Lja6g2450 Chr6 53433003 53436054 +
Mepo Mepo6g00946 Chr6 9912516 9914954 +
Mesa Mesa5g03722 Chr5 64978075 64979659 -
Phac Phac6g00621 Chr6 11129128 11133455 -
Phco Phco11g00836 Chr11 6134634 6137171 +
Psa Psa5g4015 Chr5 317094361 317097476 -
Pste Pste2g02589 Chr2 26064850 26071236 +
Pte Pte19g00495 Chr19 3993038 3996466 +
Pvu Pvu6g1531 Chr6 26052939 26055888 -
Spst Spst6g01214 Chr6 11119479 11121884 +
Sto Sto10g0485 Chr10 3941180 3947618 +
Vimu Vimu2g01130 Chr2 7464486 7466983 +
Vivi Vivi4g03249 Chr4 146796202 146799138 -
Vvi Vvi19g0641 Chr19 6966540 7002635 +
Psa Psa5g4014 Chr5 317048667 317060132 -
Vvi Vvi19g0642 Chr19 7005502 7044859 +
Apr Apr2g0208 Chr2 2654374 2667667 -
Apr Apr9g1761 Chr9 26647246 26651414 -
Bva Bva12g02720 Chr12 19860689 19866164 -
Cca Cca09g01117 Chr09 32224278 32240077 +
Gma Gma02g02752 Chr02 53164568 53168661 -
Gma Gma14g00185 Chr14 1562722 1567152 +
Mal Mal8g0420 Chr8 6361737 6367103 +
Mtr Mtr5g3311 Chr5 41992908 42010185 -
Sto Sto9g1907 Chr9 23328618 23332827 +
Vvi Vvi19g0643 Chr19 7054562 7058771 +
Bva Bva12g02719 Chr12 19857541 19859859 -
Psa Psa2g0290 Chr2 11637946 11641610 -
Vvi Vvi19g0644 Chr19 7059267 7061190 -
Vvi Vvi19g0645 Chr19 7070075 7070686 -
Adu Adu01g00175 Chr01 2334611 2335416 +
Aed Aed4g2464 Chr4 26784704 26785228 -
Arst Arst1g00257 Chr1 2334621 2335346 +
Bva Bva12g02718 Chr12 19855129 19856027 +
Car Car02g02066 Chr02 51091145 51091931 +
Car Car05g01032 Chr05 51336847 51337661 +
Cca Cca09g01118 Chr09 32247859 32248863 -
Dere Dere04g1579 Chr04 17577674 17578186 -
Gma Gma08g02988 Chr08 46453394 46453936 +
Gso Gso8g2645 Chr8 44120238 44121268 +
Lal Lal18g1577 Chr18 17377420 17377974 +
Lan Lan2g1321 Chr2 24041613 24042619 +
Lapu Lapu6g02581 Chr6 25896760 25897449 -
Mepo Mepo3g04628 Chr3 57529189 57529971 +
Mesa Mesa9g01799 Chr9 40302542 40303090 +
Mibi Mibi05g1700 Chr05 20488461 20499120 +
Phco Phco11g01978 Chr11 16137643 16138726 -
Psa Psa2g0289 Chr2 11607772 11608580 +
Pumo Pumo1g00861 Chr1 13168896 13169441 -
Pvu Pvu6g0488 Chr6 16025859 16027183 +
Rops Rops11g02749 Chr11 47349336 47350207 -
Seca Seca6g03018 Chr6 96249813 96250370 -
Spst Spst6g02005 Chr6 19877032 19877592 -
Ssu Ssu9g0975 Chr9 39657675 39658226 +
Sto Sto9g1908 Chr9 23337275 23337796 -
Vian Vian6g00393 Chr6 16965300 16965824 +
Vifa Vifa1g03323 Chr1 517801311 517801892 +
Vimu Vimu2g02503 Chr2 21015767 21017274 -
Viun Viun6g00809 Chr6 17875387 17876540 +
Vra Vra6g0226 Chr6 1689816 1690575 -
Vvi Vvi19g0646 Chr19 7076144 7082843 -
Vvi Vvi19g0647 Chr19 7088584 7094217 -
Vvi Vvi19g0648 Chr19 7106179 7108166 +
Bva Bva12g02717 Chr12 19843377 19843718 -
Psa Psa2g0287 Chr2 11389973 11393035 -
Sto Sto9g1911 Chr9 23366991 23369315 +
Vvi Vvi19g0649 Chr19 7109409 7110014 +
Bva Bva12g02716 Chr12 19841988 19842485 -
Gma Gma08g02991 Chr08 46477428 46477907 -
Gma Gma18g00798 Chr18 8968862 8969685 +
Gso Gso8g2648 Chr8 44143627 44144470 -
Gso Gso8g2648 Chr8 44143627 44144470 -
Psa Psa2g0286 Chr2 11277204 11279799 +