Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00393 ATGATGAACAAGTTCAAGAAATCTCAAGTTCTAGTGCTGTGTGTTCTAGTTCTTCTTCTTGTCATCACACCCTATTTACCTTCCTCACTCAGGCCAACCTACTTGTATTTCATCATAAACTTCCTCATCATGGCACTTTGTGCTGAAGCTGGACTCCTTTCAGTTTTTCCCAGGCCTTTGGAAGATAAAAAGCAAGCTGCTTCTGTGATGGCATCAGAAGCAAGTTCTGAGAAAAGAGAAGGTTCCAATTCCACTCCTTTCTCAGAAGATGATGAAAAAACAGCATCTGAAAGGGTTGTTTGTGGCAGGAAAGTGGAGATGATGCAAAAGTGTCCTCCAATGGGTAGCCTTTTCTTGATAGAAGGTGATGAAGAAGTGATGGATGAAGAAGATGAAGCAGAAGAGGAGATTGGAGGAGTAAATGGGCAAGAGCTGTTTGCAAAAGCTGAGGCCTTCATTGGGAACTTCTACAAGCAACTGAAGATGCAGAGTGAGGAATCTTGGATTTATCAGAAAGCCTTTTAG 525 0.421 MMNKFKKSQVLVLCVLVLLLVITPYLPSSLRPTYLYFIINFLIMALCAEAGLLSVFPRPLEDKKQAASVMASEASSEKREGSNSTPFSEDDEKTASERVVCGRKVEMMQKCPPMGSLFLIEGDEEVMDEEDEAEEEIGGVNGQELFAKAEAFIGNFYKQLKMQSEESWIYQKAF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00393 174 MobiDBLite consensus disorder prediction 67 96 - -
Vian6g00393 174 Pfam Cotton fibre expressed protein 143 168 IPR008480 -
Vian6g00393 174 PANTHER OS01G0532300 PROTEIN 2 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00393 Vian-Chr6 16965300 16965824 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00393 - - vra:106780159 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00393 6 16965300 16965824 Vian6g00393 6 16965300 16965824 ECH
Vian6g00393 6 16965300 16965824 Vian7g01186 7 20158371 20158913 PCT