Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02589 TGGGGAGGGGAGTATTGGCAATGAATCAGAAAATGGTTTATATATGGGGAAGGTGGGATGCGAGTGAGACGCGCGAAGTGGAATGGCATCGGCATCGGCGTCGGCGTCGGCGAATGCGGTGGTGGAGCGCGTCCAGCAAGCAGCGGAACGTTGTGGTCGGAATGTGGAAGAGGTCCGTGTTGTGGCGGCGAGCAAGACCAAGCCCGTTTCTGCTCTCCGCCAGGTGTACGACGCCGGCCTTAGATGCTTCGGCGAGAACTACGTTCAGGAACTCCTTCAAAAATCTCCCCAGCTTCCTCACGATGTCGAGTGGCACTTAATCGGCAATTTGCAGACCAATAAAGTCAAGCCTCTTATCGCTGGGGTTCCAAACCTTGCTTGTGTAGAAACTGTGGACGATGAGAAGATAGCAAATCTTCTTGATCGTGCTGTAGCAAATGTTGGCAGGAAGCCGTTGAAGGTTTTTGTTCAAGTGAATACAAGTGGAGAAACTTCCAAATTTGGTGTTGAACCCGCTCAGTGTGTGGATCTTGTAAAACATATTACAAACTGCCCAAACCTTGAATTTTGTGGCCTAATGACAATTGGCATGCTGGATTATTCATCCACCCCAGAAAATTTTAAGACTTTGTCCAACTGCAGAACTGAAGTTTGTAAAGCGCTTGGAATATCAGAAACTCAATGTGAGCTGTCAATGGGCATGACTGGAGACTTTGAGCAAGCTATTGAGATGGGAAGTACAAATGTTAGGATTGGCACTGCCATATTTGGGGCCAGAGAATATCCACCGAAAGAAGAGAATCTTCTTAGTGTTGCCATATGGTGCTGCTTACATCACGGTGAAACTCCATTGTTGGTGAGTGGAAGTGTCCTAAAGTCAGTACGAGAGGGATGTTCAGGATCATTGAATGGCATAATGAAGCACCATGAAGTCCTAGCCACCTATGCCTCTATGCTAAAAAGCCGTGTTCCTTCTGACGCCTACACCTTCCCCACTCTTCTCAAAGCTTGTTCTTCTCTCAACCTCTTCTCCCTTGGTCTTACCCTCCATCAACGTATTCTCGTTAACGGCTTCTCCCTTGATCCCTACATTGCCTCTTCCTTGATCCATTTCTATGCTAATTTTGGGCGCGCTCCTTTTGCTCGCAAAGTATTCGACTTTATGCCCCACAAGAATGTCGTACCCTGGACTACCATTATTGGTTGCTACTCCCGCATTGCTCATGTTTCTGAAGCCTTTTCTTTGTTTAATCAAATGCGTCGCCAGGGAATTCAACCCAGTAGCGTAACCATCTTGAGCTTGCTGTTCGGAGTTTCAGACCTTGCTCACGTGCAGGGTGAGTTGAAATTGGGGAAGTGCTTGCATGGGCAGATTCTAAGAGCTGGTTTTAACTTGGACGCACATGTCGAAACATCTTTGATTGTGATGTACTTAAAAGGTGGGAACATTGACATTGCATTTAGAATGTTTGAAAGGAGCTCAGACAAAGATGTGGTTTTCTGGACAGCAATGATCTCAGGCCTTGTGCAGAACGGTTCTGCAGACAAAGCACTAGCCGTTTTCCGTCAGATGCTAAAATTTGGAGCGAAACCATCTACTGCTACTATGGCCAGTGTAATCACAGCTTCTGCACAACTTGGTCGTGCTGGGAGGGTAGAGGAGGCATATAACCTGTACAAGAAAAAGTTCTCAGGTCCTGTACTTGATGTTTTAGGCATAATCCTTGATGCTTGTCGAGCAAATGGTGATAATGAACTTGCTGATACTATTGCCAATGATATTCTCAGGCTGAGGCCCATGCAAGCTGGAAATTATTTACAATTAGCGCACTGCTATGCATCATTAAATAAGTGGGACGAAGTGGGTGAGGCCTGGACCCATATGAGATCCCTTGGTTTGAAAAAAATCCCTGGATGGAGCTTTATTGACATACATGGGACTATCACTACATTTTTCACAGATCACAACTCACACCCCCAGTTTCAAGAAATAATTTGTACACTAAAAATTTTGCGAAAGGAAATGATCAAGATGGAGGAAGTGGACATTAACCTT 2056 0.4572 MASASASASANAVVERVQQAAERCGRNVEEVRVVAASKTKPVSALRQVYDAGLRCFGENYVQELLQKSPQLPHDVEWHLIGNLQTNKVKPLIAGVPNLACVETVDDEKIANLLDRAVANVGRKPLKVFVQVNTSGETSKFGVEPAQCVDLVKHITNCPNLEFCGLMTIGMLDYSSTPENFKTLSNCRTEVCKALGISETQCELSMGMTGDFEQAIEMGSTNVRIGTAIFGAREYPPKEENLLSVAIWCCLHHGETPLLVSGSVLKSVREGCSGSLNGIMKHHEVLATYASMLKSRVPSDAYTFPTLLKACSSLNLFSLGLTLHQRILVNGFSLDPYIASSLIHFYANFGRAPFARKVFDFMPHKNVVPWTTIIGCYSRIAHVSEAFSLFNQMRRQGIQPSSVTILSLLFGVSDLAHVQGELKLGKCLHGQILRAGFNLDAHVETSLIVMYLKGGNIDIAFRMFERSSDKDVVFWTAMISGLVQNGSADKALAVFRQMLKFGAKPSTATMASVITASAQLGRAGRVEEAYNLYKKKFSGPVLDVLGIILDACRANGDNELADTIANDILRLRPMQAGNYLQLAHCYASLNKWDEVGEAWTHMRSLGLKKIPGWSFIDIHGTITTFFTDHNSHPQFQEIICTLKILRKEMIKMEEVDINL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02589 658 Gene3D Tetratricopeptide repeat domain 415 612 IPR011990 GO:0005515
Pste2g02589 658 NCBIfam YggS family pyridoxal phosphate-dependent enzyme 8 232 IPR011078 GO:0030170
Pste2g02589 658 NCBIfam pentatricopeptide repeat 369 400 IPR002885 -
Pste2g02589 658 NCBIfam pentatricopeptide repeat 474 505 IPR002885 -
Pste2g02589 658 SUPERFAMILY PLP-binding barrel 8 230 IPR029066 -
Pste2g02589 658 Gene3D Tetratricopeptide repeat domain 278 414 IPR011990 GO:0005515
Pste2g02589 658 FunFam Pentatricopeptide repeat-containing protein At3g58590 423 523 - -
Pste2g02589 658 SUPERFAMILY TPR-like 354 597 IPR011990 GO:0005515
Pste2g02589 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Pste2g02589 658 CDD PLPDE_III_YBL036c_euk 13 230 - -
Pste2g02589 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Pste2g02589 658 FunFam Pentatricopeptide repeat-containing protein At3g16610 274 419 - -
Pste2g02589 658 Pfam E motif 556 615 IPR046848 -
Pste2g02589 658 FunFam Pyridoxal phosphate homeostasis protein 1 239 - -
Pste2g02589 658 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 6 239 IPR011078 GO:0030170
Pste2g02589 658 Pfam PPR repeat family 364 410 IPR002885 -
Pste2g02589 658 Pfam PPR repeat family 469 515 IPR002885 -
Pste2g02589 658 Hamap Pyridoxal phosphate homeostasis protein. 8 231 IPR011078 GO:0030170
Pste2g02589 658 Pfam Alanine racemase, N-terminal domain 11 232 IPR001608 -
Pste2g02589 658 Gene3D Alanine racemase 2 241 IPR029066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02589 Pste-Chr2 26064850 26071236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02589 275 648 Glycoside Hydrolase AT3G49170 27.119 3.38e-43 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02589 2 26064850 26071236 Pste2g02589 2 26064850 26071236 ECH