Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0488 ATGTCCTCTATATATGCACATTCAGAACCCCATACTTATTCCTACTACTTCCAATTCCAATCTAACTCTACTTCATCTTGTTCTTTCTCACCATTCTTCTTATTGATACTTTTTTTTCTCTCATTTCACAAAGCCATGAACAAGTTTAAGAAATCTCAAGTTCTAGTGCTCTGTGTTCTAGTTGTTCTCCTTGTCATCACACCCTCTTTACCTTCCTCACTTAGGCCAACCTACTTGTATTTCATCATAAACTTCCTCATCATGGCACTTTGTGCTGAGGCTGGACTCCTTTCAGTTTTTTCTAGGCCTTCGGAAGATAAAAAGCAACCTGTGATGCCACCAGAAGCCACTTCTGAGAAAAGAGAAGGTTACAATTCCACCCCTATAGTTGTTGGTGCTGTCTCAGAACATGCTGAAAAGTCTGCATCTGAAAGGGTTGTTTGTGTCAGCAAAGTGGACATGGTGCAAAATTGTCCTTCAATGCCTAGCCTTTTCTTCACAAGGGGTGGAGAAGCTGATGAAGAAGTCATGGATGAAGAAGTTGAAGCAGAAGAGGAGATTGGAGGAGTTAATGGACAAGAGCTGTTTGCAAAAGCTGAGGCCTTCATTGGGAACTTCTACAAGCAACTGAAGATGCAAAGTGAGGAATCTTGGATTTATCAGAAAGCCTTTTAG 675 0.4104 MSSIYAHSEPHTYSYYFQFQSNSTSSCSFSPFFLLILFFLSFHKAMNKFKKSQVLVLCVLVVLLVITPSLPSSLRPTYLYFIINFLIMALCAEAGLLSVFSRPSEDKKQPVMPPEATSEKREGYNSTPIVVGAVSEHAEKSASERVVCVSKVDMVQNCPSMPSLFFTRGGEADEEVMDEEVEAEEEIGGVNGQELFAKAEAFIGNFYKQLKMQSEESWIYQKAF* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0488 224 Pfam Cotton fibre expressed protein 193 218 IPR008480 -
Pvu6g0488 224 PANTHER OS01G0532300 PROTEIN 46 218 - -
Pvu6g0488 224 PANTHER OS01G0532300 PROTEIN 46 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0488 Pvu-Chr6 16025859 16027183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0488 - - ccaj:109811312 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0488 6 16025859 16027183 Pvu6g0488 6 16025859 16027183 ECH
Pvu6g0488 6 16025859 16027183 Pvu8g2785 8 57988617 57989386 PCT