Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0643 ATGTTTCTTGAAATGTTGGCACTACCCTTCAATGTGAAGGATAAAATAGAACCAGAATTTTTTTCTTATCCAAGTAAAAGCATGGAGGCCTCAGTTGAGGCTGTGGAGAGAATTATTAACTACAAATTTAGGAACAAAAAGCTCTTAGAGGAGGCCTTGACTCATTCATCTTACACTGATTCCGCATCGTATCAACGACTTGAGTTCATTGGTGATGCTGCATTGGGCTGTGCTCTAAGCAATTATGTGTTCCTTGCATACCCATCACTTGATCCCGGTCAACTCTCTCTGATCCGGGCTGCCAATATCAGCACTGAGAAACTTGCTCGTGTGGCTGTTCGAGTTGGGCTTTATCAGTATGTCCGGCACAATGCTGCTGCTCTTGATGATAAGGTTAGAGAATTTGCACTTGCAGTCCAAGAGGAGGGTGATTCTGTTTTGTATGGTGGATCAGTAAAAGCCCCTAAATTTCTCGCAGACATTGTTGAATCTGTGGCAGCAGCAATTTATGTAGATTGTAATTTTGATCTGCAAGTTCTTTGGGTGATCTTTAGGGGTCTCTTGGAGCCTATTGTAACACATGAAGCCTTGCAGCAACAACCCCAACCAGTGACATTGCTCTATGAACTGTGCCAGAAGGATGGAAAGCATGTCGATATCAAGCATTGGAGGAAAGGGTCGAAGAATATTGCTAGTGTTTATGTAGGTGGCAAGTTTATTGCCTCAGGTTCTTCTGACGAGAAGGAAATTGCAAAATTGAATGCTGCAAAGGAAGCCTTGCAGAAGCTGTCATCTAAATTAAAGGACACTGAGATGACCCAGAATAATCTCGAGATCAATGGATCATGTGAGATTGATGGAGCAAAACAGAAGTTACATGAGTTTTGTAGCAAGAAGAAGTGGCCCAAACCAAGTTACCGAATTGAAAAAGAAGTGGGCCCTGCTCATGAAAAGGGATTTTTGTGCTCTGTCCATATCGAAACTGTAGATGGTGTGCTTGTGATGCAGGGAGACACAAAACCAAGAGTAAAGGATGCTGAAAACTCTGCTGCTTCCTTCATGATTTGCACCCTATATGAGTCTAGATATCCGTGA 1095 0.4265 MFLEMLALPFNVKDKIEPEFFSYPSKSMEASVEAVERIINYKFRNKKLLEEALTHSSYTDSASYQRLEFIGDAALGCALSNYVFLAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPVTLLYELCQKDGKHVDIKHWRKGSKNIASVYVGGKFIASGSSDEKEIAKLNAAKEALQKLSSKLKDTEMTQNNLEINGSCEIDGAKQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGDTKPRVKDAENSAASFMICTLYESRYP* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0643 364 ProSiteProfiles Ribonuclease III family domain profile. 32 174 IPR000999 GO:0004525|GO:0006396
Vvi19g0643 364 SMART DRBM_3 203 264 IPR014720 -
Vvi19g0643 364 SMART DRBM_3 288 359 IPR014720 -
Vvi19g0643 364 PANTHER DICER-RELATED 7 274 - -
Vvi19g0643 364 Pfam Ribonuclease III domain 65 173 IPR000999 GO:0004525|GO:0006396
Vvi19g0643 364 Coils Coil 250 280 - -
Vvi19g0643 364 CDD RIBOc 47 197 IPR000999 GO:0004525|GO:0006396
Vvi19g0643 364 Gene3D Ribonuclease III domain 23 196 IPR036389 GO:0004525|GO:0006396
Vvi19g0643 364 Gene3D - 286 360 - -
Vvi19g0643 364 Pfam Double-stranded RNA binding motif 203 263 IPR014720 -
Vvi19g0643 364 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 202 265 IPR014720 -
Vvi19g0643 364 SUPERFAMILY RNase III domain-like 29 194 IPR036389 GO:0004525|GO:0006396
Vvi19g0643 364 Gene3D - 198 276 - -
Vvi19g0643 364 SUPERFAMILY dsRNA-binding domain-like 288 361 - -
Vvi19g0643 364 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 287 360 IPR014720 -
Vvi19g0643 364 FunFam Ribonuclease 3-like protein 3 27 198 - -
Vvi19g0643 364 FunFam Uncharacterized protein 201 276 - -
Vvi19g0643 364 SUPERFAMILY dsRNA-binding domain-like 156 263 - -
Vvi19g0643 364 SMART riboneu5 47 197 IPR000999 GO:0004525|GO:0006396
Vvi19g0643 364 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 287 358 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0643 - - vvi:100243580 723.391