Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0641 ATGACTTCACTTTCTCTTCCAACTCAATTTTCTTGCCATCCAAACGCCTCTTCTCTTCCTTTTTCATCCCAAAACAGAGCTCGTAATAGGGTCCCCTTTCCGAAGAAAAAATGGAGAAATAGGTGGAGATGCTCAGCCGCTGAGCAACCACAGCAACACCGGACCAAGAAGAAGAAACCCCAAGCCGAGGCAGACAAAGGGATCGACCCTGTTGGATTTCTCACCAAACTCGGCATTTCGCATAAGCAACTTTCTCAGTTCCTAAGAGAAAGACACAAAGCTCTGAAGGACCTCAAAGACGAAATTTTCAATCGCCATTTGAATCTCCAGGAGATGGCTTCTGGATATGAGATATTGGGTATGCATCGCAATGTTCAACATAGGGTGGATTTTATGGAGTGGGCTCCAGGTGCTCGCTATTGTGCACTGGTTGGTGATTTTAATGGGTGGTCACCAACAGAAAATTGTGCTAGAGAGGGTCATTTTGGCCGGGATGATTATGGCTACTGGTTTATCATTCTTGAGGATAAATTGAGGGAGGGAGAAAAACCGGATGAACTCTATTTTCAGCAGTATAACTATGTGGATGACAATGATAAAGGTGATAGTGGTGTTACCATTGAAGAACTTTTTAAGAAAGCAAATGATGAGTATTGGGAGCCTGGCGAGGACCGGTTTATAAAATCACGTTATGAAGTTGCAGCAAAGTTATATGAGCAAATATTTGGCCCCAATGGACCCGAAACAGAAGAGGAACTGGAAGAAATACCAGACGCTGAAACAAGGTATAAGGCATGGAAAGAACAGCATAAAGATGATCCCCCCAGTAATTTACCTCCTTTTGATGTGATTGACAATGGAAAAGAATATGACATTTACAATGTTGTGGATGATCCTGTATGGCGGGAAAAATTTCGTGCTAAGAAGCCTCCTTTGGCTTACTGGCTAGAGTCACGTAAAGGTAGGAAGGCATGGTTGAAAAAGTATATTCCTGGAATTCCTCATGGAAGCAAATACAGGGTCTATTTTAACACTCCAGATGGGCCTTTGGAACGAATTCCTGCATGGGCTACTTATGTGCTACCAGATGTAGATGGGAAGCAAGCTTTCGCAATTCACTGGGAACCACCACCTGAATCTGCACACAGATGGAAAAACATGCGTCCAAATGTGCCAAAGTCTTTGCGCATATATGAATGCCATGTTGGAATTAGTGGATCAGAGCAAAAGATATCCTCTTTCAATGAATTTACTGAGAATGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAAGTTACTAATTTGTATGCTACTAGCAGCCGATACGGCACGCCGGATGACTTCAAGCGCTTGGTTGATGAAGCACATGGACAAGGAATGCTGGTGTTCTTGGACATTGTTCATTCCTACTCTGCAGCAGATGAGATGGTTGGGCTATCACTATTTGATGGGTCAAATGACTGCTACTTTCATACTGGTAAACGAGGACATCACAAGTACTGGGGTACCAGAATGTTCAAATATGGTGATCCTGATGTGCTGCATTTTCTTCTCTCAAATTTGAATTGGTGGGTTGTGGAGTATCAAATTGATGGTTTCCAGTTCCATTCACTCTCATCAATGATTTATACACACAACGGCTTTGCTTCTTTTACTGGTGATTTGGAGGAGTATTGCAATCAATATGTTGACAAAGATGCATTGATGTACCTGATTTTGGCAAATGAAATACTACATGCTCTTCATCCTAAAATAGTAACAATTGCTGAAGACGCAACATATTATCCTGGACTATGCGAACCAACTTCTCAAGGTGGACTGGGATTTGATTATTATGTCAATCTTTCTGCACCAGATATGTGGTTGGACTTCCTTGAGAATATCCCTGACCATGAATGGAGCATGAGTAAGATTGTGAGTACATTAATCGGAAACAGACAATATGCAGATAAGATGCTTGTTTATGCTGAAAATCACAACCAGTCTATATCTGGAGGGCGGTCATTTGCAGAGATATTGTTTGGGGCCATAAAGGAAGATCCGCTCAGCTCAAAGACGACTTTACTTAGAGGGTGTTCTTTGCACAAAATGATCAGATTGATTACACTTACAATTGGTGGCCATGCTTACCTCAACTTCATGGGAAATGAATTTGGGCATCCAAAGAGGATTGAATTCCCAATGCCAAGCAACAATTTCTCACTTTCACTTGCTAACCGGTGCTGGGATTTGTTAGAAAATGAAGTGCATCATAATTTGTTTTCTTTTGATAAGGACATGATGAAGTTGGGTGAAAATGAAAGGTCACTTTCAAGAGGTTTACCTAATATTCACCATGTGAAAGATTCTGCCATGGTAATATCTTACATGAGAGGTCCTCTTCTCTTCATATTCAACTTTCATCCCACGAATTCTTATGAAGGATACTATGTGGGTGTAGAAGAAGCTGGAGAGTATCAAATAATACTGAATACAGACGAAACAAAGTATGGTGGTCAAGGACTTATTGAAGAAGGGCAATATCTTCGGAGAACCATTAACAGAAGAGTTGATGGTCTCCGAAACTGCTTAGAAGTGTCTCTTCCCAGTAGAACCGCGCAGGTCTACAAATTAAGCCGGATTTTAAGAATATGA 2691 0.4125 MTSLSLPTQFSCHPNASSLPFSSQNRARNRVPFPKKKWRNRWRCSAAEQPQQHRTKKKKPQAEADKGIDPVGFLTKLGISHKQLSQFLRERHKALKDLKDEIFNRHLNLQEMASGYEILGMHRNVQHRVDFMEWAPGARYCALVGDFNGWSPTENCAREGHFGRDDYGYWFIILEDKLREGEKPDELYFQQYNYVDDNDKGDSGVTIEELFKKANDEYWEPGEDRFIKSRYEVAAKLYEQIFGPNGPETEEELEEIPDAETRYKAWKEQHKDDPPSNLPPFDVIDNGKEYDIYNVVDDPVWREKFRAKKPPLAYWLESRKGRKAWLKKYIPGIPHGSKYRVYFNTPDGPLERIPAWATYVLPDVDGKQAFAIHWEPPPESAHRWKNMRPNVPKSLRIYECHVGISGSEQKISSFNEFTENVLPHIKEAGYNAIQLIGVVEHKDYSSVGYKVTNLYATSSRYGTPDDFKRLVDEAHGQGMLVFLDIVHSYSAADEMVGLSLFDGSNDCYFHTGKRGHHKYWGTRMFKYGDPDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASFTGDLEEYCNQYVDKDALMYLILANEILHALHPKIVTIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLENIPDHEWSMSKIVSTLIGNRQYADKMLVYAENHNQSISGGRSFAEILFGAIKEDPLSSKTTLLRGCSLHKMIRLITLTIGGHAYLNFMGNEFGHPKRIEFPMPSNNFSLSLANRCWDLLENEVHHNLFSFDKDMMKLGENERSLSRGLPNIHHVKDSAMVISYMRGPLLFIFNFHPTNSYEGYYVGVEEAGEYQIILNTDETKYGGQGLIEEGQYLRRTINRRVDGLRNCLEVSLPSRTAQVYKLSRILRI* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0641 896 Gene3D - 794 893 IPR013780 -
Vvi19g0641 896 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 55 890 - -
Vvi19g0641 896 FunFam 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 382 785 - -
Vvi19g0641 896 Gene3D Immunoglobulins 114 222 IPR013783 -
Vvi19g0641 896 Pfam Alpha amylase, catalytic domain 422 492 IPR006047 GO:0005975
Vvi19g0641 896 SUPERFAMILY Glycosyl hydrolase domain 794 890 - -
Vvi19g0641 896 SUPERFAMILY E set domains 112 182 IPR014756 -
Vvi19g0641 896 SMART aamy 413 759 IPR006047 GO:0005975
Vvi19g0641 896 PIRSF GlgB 8 896 IPR037439 GO:0003844|GO:0005978
Vvi19g0641 896 MobiDBLite consensus disorder prediction 39 66 - -
Vvi19g0641 896 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 119 181 IPR004193 GO:0004553|GO:0005975
Vvi19g0641 896 MobiDBLite consensus disorder prediction 15 29 - -
Vvi19g0641 896 MobiDBLite consensus disorder prediction 15 34 - -
Vvi19g0641 896 SUPERFAMILY (Trans)glycosidases 338 792 IPR017853 -
Vvi19g0641 896 Pfam Alpha amylase, C-terminal all-beta domain 802 890 IPR006048 GO:0003824|GO:0005975|GO:0043169
Vvi19g0641 896 Gene3D Immunoglobulins 331 381 IPR013783 -
Vvi19g0641 896 FunFam 1,4-alpha-glucan-branching enzyme 3 328 381 - -
Vvi19g0641 896 FunFam 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 794 893 - -
Vvi19g0641 896 FunFam 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 114 222 - -
Vvi19g0641 896 MobiDBLite consensus disorder prediction 50 65 - -
Vvi19g0641 896 Gene3D Glycosidases 382 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0641 Vvi-Chr19 6966540 7002635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0641 1 896 Glycoside Hydrolase AT3G20440 72.167 0.0 1365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0641 K00700 - vvi:100260732 1848.56