LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g02719	ATGGTCTCCCCCGGCTCATCCCAATCGACGACGTCGTTTTCTGACATGGAAACTTCAGTGGAAGCAGTTGAGAAAATCATAAAGCACCAGTTCAAAAATAAGAAGCTTCTAGAGGAAGCACTCACTCATTCCTCCCTCGGAGACTCTCCTTCCTATGAACGCCTCGAATTCTTTGGCGACGCCGTTTTACAACTTGCTGTCAGCAAATATCTCTTTGCTGAGTACCCAAACCTCGACCCCAACTACCTCACGCGCCTCCGCTCTGTAAATACCAGCAACGAGAGGCTGGCACGTGTTGCTGTTCGCCATGACATCTATCCCTATGTTCGCCAAAATGCCCCTGATCTTACAGATAAGGTGAGAGAGTTTTATGAGGCTGCGAATCAAGAGGACGATATTGTTATCCATGGTGGATCAGTGAAACCTTGCTGTGTTCTTCCTGACATTGTTGAGTCCATCATTGGTGCAGTTCACATAGACGTTGATTATGACCTGGAAAAGTCGTGGCTGATAGTTAGGGATCTTTTGGAGCCAATGGTTACACTTGATGATCTCAAGAAAGAACCCCAACCAGTGACAAGGCTCTATGAATATTGTGCCAAGGCACATATAAAAGTAGACATCAAACGTTCGAATGATACCTCGAATGTGTATGTTGATGGAGAGTTCTTTGTGTCAGGTTCTAACGACTTAGATGCTGCCAAGAAAGCATTGCTTGAATTTGGAGATCCAGTACTGCCTGCTAATAATACTTGGGAACTCAAGTTTTGGGCTGAAATTGATGATacattaaatgagattaaagAAGCCAAACAAAAGTTATGTGTCCTTTGTCGCAAGAAACAATTGCCCAAACCAGAATACAGCTCTGCAATCCAACTGCATAGAAGTATGAGAGAGAAAACGGGCACTTTGACCTCCCTCTCTTCCTATCTCTCTCTTACTACCCTACAGCTGGACAGCAGAGGATCCATGCTCGGCACAATAAACAGCCCAGAGAACGAATCAGGTCCTCCACATGAAAAGAAAGTCAAGTTCGCCGTTGAAATAGATGGCATAGGCCGCATGATTGGAGAGGAAAAGGCAAAAAAGAAGCACGCAAATAACTCTGCGGCTTCCTTGTTGATTCGATCTCTGAAAAAAATCTACTCTCTATG	1157	0.4417	MVSPGSSQSTTSFSDMETSVEAVEKIIKHQFKNKKLLEEALTHSSLGDSPSYERLEFFGDAVLQLAVSKYLFAEYPNLDPNYLTRLRSVNTSNERLARVAVRHDIYPYVRQNAPDLTDKVREFYEAANQEDDIVIHGGSVKPCCVLPDIVESIIGAVHIDVDYDLEKSWLIVRDLLEPMVTLDDLKKEPQPVTRLYEYCAKAHIKVDIKRSNDTSNVYVDGEFFVSGSNDLDAAKKALLEFGDPVLPANNTWELKFWAEIDDTLNEIKEAKQKLCVLCRKKQLPKPEYSPENESGPPHEKKVKFAVEIDGIGRMIGEEKAKKKHANNSAASLLIRSLKKIYSL	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g02719	343	Gene3D	-	263	338	-	-
	Bva12g02719	343	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	269	339	IPR014720	-
	Bva12g02719	343	SMART	riboneu5	35	185	IPR000999	GO:0004525\|GO:0006396
	Bva12g02719	343	SUPERFAMILY	dsRNA-binding domain-like	266	339	-	-
	Bva12g02719	343	SMART	DRBM_3	270	338	IPR014720	-
	Bva12g02719	343	CDD	RIBOc	35	185	IPR000999	GO:0004525\|GO:0006396
	Bva12g02719	343	PANTHER	RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED	20	331	-	-
	Bva12g02719	343	Pfam	Ribonuclease III domain	53	160	IPR000999	GO:0004525\|GO:0006396
	Bva12g02719	343	Pfam	double strand RNA binding domain from DEAD END PROTEIN 1	269	338	-	-
	Bva12g02719	343	SUPERFAMILY	RNase III domain-like	17	181	IPR036389	GO:0004525\|GO:0006396
	Bva12g02719	343	Gene3D	Ribonuclease III domain	7	182	IPR036389	GO:0004525\|GO:0006396
	Bva12g02719	343	ProSiteProfiles	Ribonuclease III family domain profile.	20	162	IPR000999	GO:0004525\|GO:0006396
	Bva12g02719	343	PANTHER	DICER-RELATED	20	331	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g02719	Bva-Chr12	19857541	19859859	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g02719	-		-	qlo:115956240	301.597

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva12g02719	12	19857541	19859859	Bva12g02719	12	19857541	19859859	ECH