Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0290 ATGAAGATGGAAGCTTCAGTTTCAGCAGTGGAGAAAATAATCGGTTACAGTTTTCAAAACAAGAAGCTTCTTGAACAAGCCCTAACCCATTCTTCTTACCCCGATTCTGTTTCTTACGAGCGTCTTGAGTTTCTTGGCGACGCCGTTTTAGGTCTCGCTACCAGCAACCACCTCTTCCTCGCTTACTCCTCCGTCGATCCTGGTACACTCTCCCTTCTCCGTGCCGCTAATGTTAGCACCGAGAAACTCGCTCGCGCTGCCGTTCGTAATGGTCTACACCGTTATGTACGTCATAACACGGTTTCTATTGTTGATATGATTAACGAGTTTGTTGATGCGGTTGATTGTGAGGATGATTGTGTTGTTGTTAAGTATGGTGGATTGGTGAAAGCTCCCAAGATTCTTGCCGATATTGTGGAATCTATTGCTGCTGCTGTTTATGTTGATCTTGATTTTGATCTTAAAAGATTATGGGTGGTAATAAGAGGTCTTTTGGAGCCGATAGTGACACTTGATGATTTGGAACATAAACCGCAACCTGTGACGATGCTTTTTGAGATCTGCCAAAAAAATGGGAAAAAAGTTGACATACAACAGCAGAGGAATGGTGCCAAAAGCACTGCAAGTGTCTATGTTGATGGGGAGTTGATTGCATCCGCGTCCTCAGATCAAAAGGATATTGCTAGGCTTGAAGCTGCCAAGGCTGCCTTGCATAAACTAGAATGCTTACTGCCTGCCACTACCATGATGCCTGACTGTTGTGTCGACATTGATGGTACTTTTGAAGTTGAAGCTGGCAAGCAAAAATTATACGCAATTTGTGGCATGAAAAAGTGGCCCAAACCAGTATACAGCATTGAGAAAGATGAAGGTACTCCTCAAGACAAGAAATATGTCAGTGCTGTTCGGATAGCTACTCCAGCTGCCACACTTCAAATGTCTGGAGATGAGAAATCTCGGGTGAAGGATGCAGAGAACTCTGCCGCTTCCTTGATGATTCGGGCCTTACAACATCACAAGTATGTGTGA 1029 0.4422 MKMEASVSAVEKIIGYSFQNKKLLEQALTHSSYPDSVSYERLEFLGDAVLGLATSNHLFLAYSSVDPGTLSLLRAANVSTEKLARAAVRNGLHRYVRHNTVSIVDMINEFVDAVDCEDDCVVVKYGGLVKAPKILADIVESIAAAVYVDLDFDLKRLWVVIRGLLEPIVTLDDLEHKPQPVTMLFEICQKNGKKVDIQQQRNGAKSTASVYVDGELIASASSDQKDIARLEAAKAALHKLECLLPATTMMPDCCVDIDGTFEVEAGKQKLYAICGMKKWPKPVYSIEKDEGTPQDKKYVSAVRIATPAATLQMSGDEKSRVKDAENSAASLMIRALQHHKYV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0290 342 CDD RIBOc 22 174 IPR000999 GO:0004525|GO:0006396
Psa2g0290 342 PANTHER DICER-RELATED 7 333 - -
Psa2g0290 342 ProSitePatterns Ribonuclease III family signature. 40 48 IPR000999 GO:0004525|GO:0006396
Psa2g0290 342 Pfam Ribonuclease III domain 40 149 IPR000999 GO:0004525|GO:0006396
Psa2g0290 342 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 166 242 IPR014720 -
Psa2g0290 342 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 7 333 - -
Psa2g0290 342 ProSiteProfiles Ribonuclease III family domain profile. 7 151 IPR000999 GO:0004525|GO:0006396
Psa2g0290 342 Gene3D - 272 338 - -
Psa2g0290 342 Gene3D Ribonuclease III domain 2 176 IPR036389 GO:0004525|GO:0006396
Psa2g0290 342 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 266 337 - -
Psa2g0290 342 SMART riboneu5 22 174 IPR000999 GO:0004525|GO:0006396
Psa2g0290 342 SMART DRBM_3 180 241 IPR014720 -
Psa2g0290 342 SMART DRBM_3 266 337 IPR014720 -
Psa2g0290 342 SUPERFAMILY dsRNA-binding domain-like 133 245 - -
Psa2g0290 342 Pfam Double-stranded RNA binding motif 180 240 IPR014720 -
Psa2g0290 342 Gene3D - 177 248 - -
Psa2g0290 342 SUPERFAMILY RNase III domain-like 4 170 IPR036389 GO:0004525|GO:0006396
Psa2g0290 342 SUPERFAMILY dsRNA-binding domain-like 266 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0290 Psa-Chr2 11637946 11641610 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0290 - - tcc:18593457 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g0290 2 11637946 11641610 Psa2g0290 2 11637946 11641610 ECH