Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0226 ATGAAAACATTCAACAAATTTGAAGTTGTGATGCTCTTTGTCCTTGCTCTTCTCCTTGGGATCACACCCTTGTTACCTTCTTCTCTGAGGCCAACCTTCCTTTATTTCATCTTCAACGTTCTCATCATTGCACTAGGAGCAGAAGCTGGTCTTCTCTCAGTTTTTTCCAAGCCTTTAGAAGACACAAAGCAACATGTTTCTGTCACCCAGAAACCTGTAACTCTCCCAGAAGAGGAAAAGGAAGAAAAGGAAGAAGCTTTCAACATAACAGGTGGAAGTGGTGCCTCAGACCACATTGAAATGAAGGCTAAGGTTGTTGAAGTGCTTGCTTTTGATGCTTCTGATGAGAAGATTGTTGGTGTCAGTGAAGTGACAAATCTTTTGATCATAGGAGGTGGAGAGAATGAACAGATAGATGAGCAAGAGTTGTTTGCCAAAGCTGAGGCCTTCATTGGGAACTTCTACAAACAGTTAAAGATGCAGAAAGAGATCTATCAGGAAGCCTTTTAG 510 0.4157 MKTFNKFEVVMLFVLALLLGITPLLPSSLRPTFLYFIFNVLIIALGAEAGLLSVFSKPLEDTKQHVSVTQKPVTLPEEEKEEKEEAFNITGGSGASDHIEMKAKVVEVLAFDASDEKIVGVSEVTNLLIIGGGENEQIDEQELFAKAEAFIGNFYKQLKMQKEIYQEAF* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0226 169 Pfam Cotton fibre expressed protein 141 165 IPR008480 -
Vra6g0226 169 PANTHER OS01G0532300 PROTEIN 1 134 - -
Vra6g0226 169 PANTHER OS01G0532300 PROTEIN 131 163 - -
Vra6g0226 169 PANTHER OS01G0532300 PROTEIN 131 163 - -
Vra6g0226 169 PANTHER OS01G0532300 PROTEIN 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0226 Vra-Chr6 1689816 1690575 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0226 - - vra:106764543 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0226 6 1689816 1690575 Vra6g0226 6 1689816 1690575 ECH
Vra10g0184 10 5116694 5117450 Vra6g0226 6 1689816 1690575 PCT