Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2450 ATGGCATCGTCAGCCACCACAGACGGCGGCCCATCGCCACCGCTGAAGGCGGTGCTGGAACGCGTCCAACAGGCAGCGGAGCGGTCAGGGAGGGATGTGAAGGAGATCCGGGTGGTGGCTGCGAGCAAGATGAAGCCAGTATCTGCCCTCCAACAGGTGTATGATGCCGGACATCGATGCTTCGGCGAGAACTACGTTCAGGAACTCATTGAGAAAGTTCCCCAGCTTCCAGATGATATCGAATGGCATTTCATTGGGCACTTGCAGAGTAATAAAGTTAAGCTTCTTGTTGCTGGTGTTCCCAACCTCGCTTATGTAGAGACTGTAGATGACGAGAAGAAAGCAAATCTTCTTGATCGTGCTGTAGAAAAAATTGGCAGGAACCCGTTGAAAGTTTTTGTTGAAGTGAATACAAGTGGAGAAACATCAAAATTTGGTGTTGAGCCAGCTCTTTGTGTAGACCTTTTAAAACATATTGTTACAAAATGCCCAAACCTTGAGTTCTGTGGCCTGATGACAATTGGCATGTTGGACTATTCATCCACCCCTGAAAATTTTAAGACATTGTTCAATTGTAGAAGTGAAGCTTGTACGGCACTTGGAATACCAGAAGAGAAATGTGAGCTGTCAATGGGCATGACTGCAGATTTTGAGCGAGCTATCGAGATGGGAAGTACAACTGTTAGGGTTGGAACTGCCATATTTGGACCCAGAGATTATCCACTGAGAGAAGAGGAGTAG 741 0.4696 MASSATTDGGPSPPLKAVLERVQQAAERSGRDVKEIRVVAASKMKPVSALQQVYDAGHRCFGENYVQELIEKVPQLPDDIEWHFIGHLQSNKVKLLVAGVPNLAYVETVDDEKKANLLDRAVEKIGRNPLKVFVEVNTSGETSKFGVEPALCVDLLKHIVTKCPNLEFCGLMTIGMLDYSSTPENFKTLFNCRSEACTALGIPEEKCELSMGMTADFERAIEMGSTTVRVGTAIFGPRDYPLREEE* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2450 246 PANTHER PYRIDOXAL PHOSPHATE HOMEOSTASIS PROTEIN 5 243 - -
Lja6g2450 246 Gene3D Alanine racemase 12 244 IPR029066 -
Lja6g2450 246 TIGRFAM TIGR00044: pyridoxal phosphate enzyme, YggS family 17 238 IPR011078 GO:0030170
Lja6g2450 246 PIRSF YBL036c_PLPDEIII 3 244 IPR011078 GO:0030170
Lja6g2450 246 CDD PLPDE_III_YBL036c_euk 15 236 - -
Lja6g2450 246 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 5 243 IPR011078 GO:0030170
Lja6g2450 246 Pfam Alanine racemase, N-terminal domain 16 238 IPR001608 -
Lja6g2450 246 ProSitePatterns Uncharacterized protein family UPF0001 signature. 82 96 IPR011078 GO:0030170
Lja6g2450 246 Hamap Pyridoxal phosphate homeostasis protein. 13 237 IPR011078 GO:0030170
Lja6g2450 246 SUPERFAMILY PLP-binding barrel 14 236 IPR029066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2450 Lja-Chr6 53433003 53436054 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2450 K06997 - gmx:100527295 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2450 6 53433003 53436054 Lja6g2450 6 53433003 53436054 ECH