Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03018 ATGAACAAGTTTAAGAAATCTCAAGTTCTAGTGCTCTTTGTTCTAGTTCTTCTTCTTGTCATCACACCCATGTTACCTTCTTCTCAAAGGCCTACCTACTTGTACTTCATCTCAAACTTCATCATCATTGCACTTGGTGCTGAAGCTGGCCTTCTTTCAGTATTTTTCAGGCCTTTAGAAGACACAAAGCAATCTGCTTCTGTTATCCTGAAACCTGAGATGCCTCCAGAAGCAGCCACTCTTGAGAAAAAGGAAGTTTCCACCACCACAGGTGTAAGTGCTCTCTCAGAACATGTTGAAAAGTCTGCATCTGAGAGGGTTGTTTGTGTCACCAAAGTGGACAAGGTGCAAAAGTGTCCTTCAAGGCCTAGCCTTTTCTTCATAGGAGGTGGAGAAACTGATGCAGAATTCATGGATGAAGAGCTTGAAGTAGAAGAGGAGATTGAGGGAGTTAATGGACAAGAACTGTTTGCAAAAACTGAGGCTTTCATTGGGAACTTCTACAAACAATTGAAGATGCAGAGAGAGGAATCTTGGATTCATCAGAAAGCCTTTTAG 558 0.4194 MNKFKKSQVLVLFVLVLLLVITPMLPSSQRPTYLYFISNFIIIALGAEAGLLSVFFRPLEDTKQSASVILKPEMPPEAATLEKKEVSTTTGVSALSEHVEKSASERVVCVTKVDKVQKCPSRPSLFFIGGGETDAEFMDEELEVEEEIEGVNGQELFAKTEAFIGNFYKQLKMQREESWIHQKAF. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03018 185 PANTHER OS01G0532300 PROTEIN 1 181 - -
Seca6g03018 185 Pfam Cotton fibre expressed protein 154 180 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03018 Seca-Chr6 96249813 96250370 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03018 - - gmx:100785054 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03018 6 96249813 96250370 Seca6g03018 6 96249813 96250370 ECH
Seca6g03018 6 96249813 96250370 Seca6g03018 6 96249813 96250370 PCT