Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1546 . . . . Adu05g03509 . . . Aev09g2121 . Ahy19g2794 . Aip09g03260 . . . Amo19g3564 . . Apr6g1308 Arst5g04504 . Bach1g00244 . . . . . . . Cca08g01000 . . . Dod06g0901 . . . . . . . Gma16g01486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g0733 . Mal1g2172 . . . . . . . Mtr1g3639 . . . Phco5g00974 . . . . . Pste9g01000 . . . . . Pumo6g02365 . Pvu4g0995 . Rops5g01100 . . . Spst4g03385 . . . . . . . . . Tsu01g04292 . . . . . Vimu8g02641 . . . . . Vra1g1256 .
Vvi18g1547 . . . . . . . . Aev09g2122 . Ahy19g2795 . Aip09g03261 . . . . . . . . . . . . . . . . . . . . . Dod06g0900 . . . . . . Gma20g01576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g0732 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1548 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1549 . . . . . . Aed7g0724 . . . . . . . . . . . . . . . . . . . . . . . Cca08g00839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1550 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal13g0072 . . . . . Lan20g0087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto10g2109 . . . . . . . . . . . . . . . . . . .
Vvi18g1551 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma20g01573 . . . . . . . . Lal24g0076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1552 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1554 . . . . Adu05g03504 . Aed7g0728 . Aev09g2127 . Ahy19g2801 . Aip09g03265 . . . . . . . Arst5g04500 . . . . . . . . . Cca08g00846 . . . Dod06g0897 . . . . . Gma10g02141 . . . Gso10g2006 . . . . . Lal24g0077 . . . . . . . . . Lapu4g00856 . . . . . . . . . . . . Lja2g2776 . . . . . . . . . . . . Phco5g00968 . . . Psa6g4287 . Pste9g01001 . Pte16g00360 . . . Pumo6g02369 . Pvu4g1002 . Rops5g01096 . Seca10g03605 . Spst4g03383 . Ssu9g0083 . . . . . . . . . Vian8g00875 . . . Vimu8g02634 . Viun4g01831 . . . . .
Vvi18g1555 . . . . Adu09g03073 . . . . . . . . . . . . . . Apr6g1304 Arst9g04127 . . . . . . . . . Cca08g00847 . . . . . . . . . . . . . . . . . Lal13g0110 . . . . Lal9g0873 Lan20g0124 . . . . Lan20g0124 Lapu7g01943 . . . . . . . . . . . Lja5g0729 . . . . . . . . . . . . . Phco6g02366 . . . . . . . . . . . . . Pvu7g0832 . . . . . . . . . . . . . . . . . . . . . Vimu3g02916 . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu09g03073 Chr09 118534817 118536052 -
Arst Arst9g04127 Chr9 116418636 116420345 -
Lapu Lapu7g01943 Chr7 35567029 35568118 +
Phco Phco6g02366 Chr6 44883610 44887520 +
Pvu Pvu7g0832 Chr7 7759099 7762514 -
Vimu Vimu3g02916 Chr3 43293752 43296143 +
Vvi Vvi18g1546 Chr18 19565754 19573180 -
Adu Adu05g03509 Chr05 107670393 107677082 +
Aev Aev09g2121 Chr09 24251262 24260730 -
Ahy Ahy19g2794 Chr19 149822063 149828255 -
Aip Aip09g03260 Chr09 138568703 138574353 -
Amo Amo19g3564 Chr19 149933251 149941103 -
Apr Apr6g1308 Chr6 18451785 18459245 +
Arst Arst5g04504 Chr5 106348817 106355462 +
Bach Bach1g00244 Chr1 3077229 3083938 -
Cca Cca08g01000 Chr08 24200443 24206082 -
Dod Dod06g0901 Chr06 11475354 11481459 +
Gma Gma16g01486 Chr16 34115465 34124450 -
Lja Lja5g0733 Chr5 6727798 6733569 +
Mal Mal1g2172 Chr1 28657269 28662658 +
Mtr Mtr1g3639 Chr1 48017849 48023908 -
Phco Phco5g00974 Chr5 16734363 16743386 +
Pste Pste9g01000 Chr9 6480696 6489689 -
Pumo Pumo6g02365 Chr6 46800654 46808962 -
Pvu Pvu4g0995 Chr4 25319515 25328549 -
Rops Rops5g01100 Chr5 22621046 22628027 +
Spst Spst4g03385 Chr4 74086048 74093710 +
Tsu Tsu01g04292 Chr01 50690976 50696257 -
Vimu Vimu8g02641 Chr8 36834116 36842889 +
Vra Vra1g1256 Chr1 17722530 17727926 -
Vvi Vvi18g1547 Chr18 19581500 19581868 +
Aev Aev09g2122 Chr09 24269072 24269494 -
Ahy Ahy19g2795 Chr19 149841375 149841821 -
Aip Aip09g03261 Chr09 138596169 138596615 -
Dod Dod06g0900 Chr06 11462868 11463293 +
Gma Gma20g01576 Chr20 42851145 42851570 -
Lja Lja5g0732 Chr5 6724144 6724557 -
Vvi Vvi18g1548 Chr18 19583715 19584444 -
Vvi Vvi18g1549 Chr18 19587111 19588384 -
Aed Aed7g0724 Chr7 5430420 5433355 -
Cca Cca08g00839 Chr08 18156361 18160272 -
Vvi Vvi18g1550 Chr18 19593684 19596449 -
Lal Lal13g0072 Chr13 463007 466441 -
Lan Lan20g0087 Chr20 505662 508707 -
Sto Sto10g2109 Chr10 30968567 30972436 +
Vvi Vvi18g1551 Chr18 19597485 19609866 -
Gma Gma20g01573 Chr20 42816204 42830244 -
Lal Lal24g0076 Chr24 486939 489606 -
Vvi Vvi18g1552 Chr18 19617944 19618222 -
Vvi Vvi18g1553 Chr18 19625488 19626211 +
Vvi Vvi18g1554 Chr18 19629061 19648973 -
Adu Adu05g03504 Chr05 107617279 107621881 -
Aed Aed7g0728 Chr7 5495709 5502755 -
Aev Aev09g2127 Chr09 24291462 24293861 +
Ahy Ahy19g2801 Chr19 149875570 149878451 +
Aip Aip09g03265 Chr09 138611828 138625878 +
Arst Arst5g04500 Chr5 106295322 106300386 -
Cca Cca08g00846 Chr08 18666864 18678647 -
Dod Dod06g0897 Chr06 11410175 11413799 -
Gma Gma10g02141 Chr10 48898961 48912435 +
Gso Gso10g2006 Chr10 47035149 47038103 +
Lal Lal24g0077 Chr24 489941 498768 -
Lapu Lapu4g00856 Chr4 22020928 22040026 -
Lja Lja2g2776 Chr2 42334991 42357394 -
Phco Phco5g00968 Chr5 16067706 16085382 -
Psa Psa6g4287 Chr6 379883487 379884658 +
Pste Pste9g01001 Chr9 6526597 6538068 +
Pte Pte16g00360 Chr16 4841714 4853210 +
Pumo Pumo6g02369 Chr6 46918379 46934223 +
Pvu Pvu4g1002 Chr4 25563683 25579261 +
Rops Rops5g01096 Chr5 22508637 22522307 -
Seca Seca10g03605 Chr10 67705671 67720892 -
Spst Spst4g03383 Chr4 74025029 74037383 -
Ssu Ssu9g0083 Chr9 7650650 7661652 -
Vian Vian8g00875 Chr8 20304311 20313584 +
Vimu Vimu8g02634 Chr8 36649502 36664366 -
Viun Viun4g01831 Chr4 32573825 32585481 +
Vvi Vvi18g1555 Chr18 19653818 19655034 -
Adu Adu09g03073 Chr09 118534817 118536052 -
Apr Apr6g1304 Chr6 18399743 18410442 -
Arst Arst9g04127 Chr9 116418636 116420345 -
Cca Cca08g00847 Chr08 18761500 18763778 -
Lal Lal13g0110 Chr13 687280 693410 -
Lal Lal9g0873 Chr9 6536159 6537641 -
Lan Lan20g0124 Chr20 746263 752753 -
Lan Lan20g0124 Chr20 746263 752753 -
Lapu Lapu7g01943 Chr7 35567029 35568118 +
Lja Lja5g0729 Chr5 6701243 6702343 -
Phco Phco6g02366 Chr6 44883610 44887520 +
Pvu Pvu7g0832 Chr7 7759099 7762514 -
Vimu Vimu3g02916 Chr3 43293752 43296143 +