Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1256 ATGCCAAGTCCAACAGAAGTTGTGGCCCTTCTCAAGACTCAAGGTATCGAACATGTTAGACTATATGATGCTGACAGAGCCATGCTTCGTGCACTAGCCAACACAGGAATCCGTGTAATTGTTTCTGTTCCCAATGACCAGCTTCTCGGCATTGGTCAGTCCAATGCCACTGCTGCCAATTGGGTTAAACGCAATGTCATAGCTCATGTTCCTGCTACCAACATTACTGCCATAGCAGTTGGTTCTGAAGTGCTGACATCCCTCCCAAATGCAGCTCCTGTTCTAGTCTCAGCACTAAAATTCCTTCAAGCTGCTCTAGTTGCAGCCAATCTTGATCAACAAATCAAAGTCTCTACTCCACACTCTTCTTTTATCATTCTTGACTCTTTCCCACCTTCTCAGGCATTTTTTAATAAAACTTGGGATCCTGTCATGGTTCCCTTGCTCAACTTTTTGCAATCAACAGGTTCCTATCTTATGCTCAATGTGTACCCTTATTATGATTTCATGCAACCCAATGCTGTAATCCCTCTAGACTATGCTTTGTTCCGGCCCTTGCCTCCTAATAAAGAAGCTATAGATTCCAACACCATGCTGCATTATACTAATGTCTTTGATGCTGTTGTTGATGCTGCTTATTTTGCAATGTCATATTTGAACTTTACCAAAATTCCTATTATAGTCACCGAGTCAGGATGGCCCTCCAAAGGAGATTCATCCGAGCCAGATGCAACTATTGATAATGCTAACACTTACAATAGTAACTTGATCAGGCACGTCCTTAACAACAGTGGAACTCCTAAGCAACCTGGAATTTCAGTTAGCACTTATATTTATGAGCTTTATAATGAAGACTTGAGAACAGGTCCAGTGTCTGAGAATAATTGGGGTCTGTTTTATGCTAATGGAGCTCCAGTGTATACCTTGCACTTGACTAATGCTGGTACTGTATTTGCAAATGACACAACAAACCAAACCTTTTGTGTTGCCAAGAGTAATGCAGATACAAAGATGCTTCAGGCTGCACTTGATTGGGCTTGTGGACCAGGGAAGGTGGATTGTTCTCCATTGCTGCACGGTCAACCCTGTTATGATCCAAATAGTGTGGCTGCACATGCTACATATGCTATCAATGCTTATTATCAGCAGATGGCTAAATCTGCTGGGACCTGTGATTTCAAAGGAGTTGCCTCTGTCACCACTACAAATCCAAGTCACGGTTCCTGTATATTTCCTGGAAGTCACGGAAAAAATGGTAGCAGCATAAATGGGACATCATTGGCTCCATCTACCAATTCCACAAATTCAGGGTGCTTGTCACAGTATTACAATGGTGGATCTTTAACAAGATCTCTGATTCTTACTTTAATTTTGAGTGTAGCTGTCTTATAA 1392 0.4195 MPSPTEVVALLKTQGIEHVRLYDADRAMLRALANTGIRVIVSVPNDQLLGIGQSNATAANWVKRNVIAHVPATNITAIAVGSEVLTSLPNAAPVLVSALKFLQAALVAANLDQQIKVSTPHSSFIILDSFPPSQAFFNKTWDPVMVPLLNFLQSTGSYLMLNVYPYYDFMQPNAVIPLDYALFRPLPPNKEAIDSNTMLHYTNVFDAVVDAAYFAMSYLNFTKIPIIVTESGWPSKGDSSEPDATIDNANTYNSNLIRHVLNNSGTPKQPGISVSTYIYELYNEDLRTGPVSENNWGLFYANGAPVYTLHLTNAGTVFANDTTNQTFCVAKSNADTKMLQAALDWACGPGKVDCSPLLHGQPCYDPNSVAAHATYAINAYYQQMAKSAGTCDFKGVASVTTTNPSHGSCIFPGSHGKNGSSINGTSLAPSTNSTNSGCLSQYYNGGSLTRSLILTLILSVAVL* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1256 463 Pfam Glycosyl hydrolases family 17 2 310 IPR000490 GO:0004553|GO:0005975
Vra1g1256 463 Gene3D - 320 416 - -
Vra1g1256 463 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 1 453 IPR044965 GO:0004553|GO:0005975
Vra1g1256 463 Gene3D Glycosidases 1 317 - -
Vra1g1256 463 SUPERFAMILY (Trans)glycosidases 2 310 IPR017853 -
Vra1g1256 463 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 1 453 - -
Vra1g1256 463 Pfam X8 domain 327 397 IPR012946 -
Vra1g1256 463 ProSitePatterns Glycosyl hydrolases family 17 signature. 224 237 IPR000490 GO:0004553|GO:0005975
Vra1g1256 463 SMART X8_cls 326 411 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1256 Vra-Chr1 17722530 17727926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1256 1 405 Glycoside Hydrolase AT2G01630 77.778 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1256 K19891 - gmx:100810169 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1256 1 17722530 17727926 Vra1g1256 1 17722530 17727926 ECH