Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3564 ATGGATACAAAGGGAAGATTAGTTGCAGGCTCACATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGACACTGCAAGAGTGAATGGAGTTACAGAATTGAGTGGACAAATTTGCCAGATCTGTGGGGATGAGATTGAGGTTACTGTGGATGGGGAACCCTTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGTAGGCCTTGCTATGAGTATGAAAGAAGAGAGGGTAACCAAGCTTGCCCTCAGTGCAAAACCAGATACAAACGAAGCAAGGGTAGTCCTAGAGTTGAAGGTGATGAAGAAGAGGATGGTATTGATGATTTGGAGAATGAGTTTGACATTGGAAGCAATATCAAGCATGATCCTTGTCACATTGCTGAGGCAATGCTTGCGGCTCGCTTTAACGTTGCCCGGAATTCACAGTTGAATGCTTCTGGAATCACCACACCATCAGAGTTAGATGCAGCTTCTGTAGCTGCTGATATCCCTCTCCTGACTTATGGTCATGAGGATGTTGGGATTTCTGCTGAGAAGCATGCTCTCATTGTTCCTCCATKCATGCATCGTGGTAGACGGATTCATCCTATGCCTTTTCCTGATTCATCTATACCAGCTCAACCCAGACCGATGGATCCTAAAAAAGATTTGGCAGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGGATGGAGGAGTGGAAGAAAAAACAGAATGAAAAAATYGAGGTGGTTCAGCACGAAATGGTTGATGATGATGGTGGGAAAAATGGTGATGAGTTTGATCATCCAGATTTGCCTAAAATGGATGAAGGTAGACAGCCACTCTGGAGGAAGTTGCCAATTAGTCCAAGCAAGATAAATCCATATCGAATTATCATAATACTCCGAATCGCYGTTCTSGGCCTATTTTTYCATTAYAGAATTCTCCATCCTGTTAATGATGCATATGCATTATGGATGACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTGGATCAGTTTCCAAAATGGTGCCCAATCGAGCGCGAAACATACCTCGACCGTTTATCACTTAGATATGAGAAAGAAGGAAAGCCATCCGAATTAGCTGATATAGATGTATTTGTCAGTACAGTGGATCCAATGAAAGAGCCTCCACTTATCACTGCAAACACTGTTCTGTCCATTCTTGCCGTGGATTATCCGGTCGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCTATGCTTACATTTGAAGCRCTTTCAGAGACATCTGAATTYGCAAGGAAGTGGGTTCCATTCTGCAAGAAGTATAGCATTGAACCGCGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTATCTAAAAGACAAAGTGGATGCAACCTTTGTCAAGGAGCGTCGCGCTATTAAGAGGGAGTATGAAGAATTCAAAGTGCGGATTAATGCATTGGTTGCAATGGCACAGAAGGTGCCGGAGGATGGCTGGACAATGCAAGATGGAACTCCATGGCCCGGAAACAATGTCAGAGATCATCCTGGGATGATACAGGTTTTCCTAGGCCAAAACGGTGTTCGTGATATCGAAGGAAACGAGTTACCTCAACTAGTTTACGTGTCTCGCGAGAAAAGACCTGGATTTGAACACCACAAAAAAGCTGGTGCTATGAATGCCTTGATACGAGTTTCAGCTGTCATATCAAATGCTCCCTACCTACTGAATGTTGATTGTGATCACTACATAAACAATAGTAAGGCACTTCGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAGATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGCAATGTTGTGTTCTTTGATATTAACATGAAAGGTTTAGATGGCATCCAAGGACCAATTTATGTTGGAACTGGATGTGTCTTCCGGCGGCAGGCGCTTTATGGATACGATGCCCCTGTTAAGAAGAAACCGCCGACGAAGACTTGTAACTGTTGGCCTAGATGGTGCTGCTTGTGCTGTGGATCTAGGAAGAAGAATAGGAAAGTGAAATCAAGTGCTAAAAAGAAGATAAAGAGTAAGGATGGTACAAAGCAAATACATGCACTAGAAAACATTGAAGAGGGAATTGAAGGTATAGATAGTGAAAAGTCATCACTGATGTCGCAACTAAAATTTGAGAAAAAGTTTGGTCAATCACCTGTTTTCATAACTTCAACACTTATGGAAGATGGAGGTGTTCTAAAAGGAGCAAGTTCTACATCACTCTTGAAAGAAGCCATCCATGTGATTAGTTGTGGTTATGAAGATAAGACTGAGTGGGGAAAAGAGGTTGGATGGATATATGGYTCTGTTACAGAGGATATTCTAACAGGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTGTACTGCATGCCGAAAAGGCCTGCTTTTAAGGGCTCGGCTCCTATAAATCTCTCAGACCGTCTGCACCAGGTTCTCCGTTGGGCTCTTGGTTCTGTTGAGATCATGTTGAGTAGGCACTGTCCTATATGGTATGGATATGGTTGCGGCTTGAAATGGCTGGAGCGCTTTTCTTACATTAACTCTGTCGTCTACCCTTTGACTTCGATTCCCTTAATTGCCTATTGCACCTTGCCAGCAGTCTGTCTCCTCACTGGGAAGTTCATAGTCCCTGAGATTAGCAACTATGCTAGTATCATTTTCATGTCCCTCTTCATCTCTATAGCTGCAACYGGCATCCTTGAAATGCAATGGGGAGGTGTTGGAATACATGATTGGTGGAGGAATGAACAATTTTGGGTCATTGGTGGTGCATCCTCGCACCTCTTCGCTCTCTTTCAAGGTTTGCTAAAGGTTCTGGCTGGAGTTAACACAAACTTCACAGTCACATCCAAAGCTGCGGACGACGGAGAATTCGCCGAACTTTACATCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTCATCATRAACATAATAGGAGTCATTGTAGGTGTCTCAGATGCAATAAACAATGGATATGATTCATGGGGTCCCCTTTTTGGTAARCTATTTTTTGCTCTATGGAAGCTTCATGGGGTTTGGTGA 3132 0.4278 MDTKGRLVAGSHNRNEFVLINADDTARVNGVTELSGQICQICGDEIEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRSKGSPRVEGDEEEDGIDDLENEFDIGSNIKHDPCHIAEAMLAARFNVARNSQLNASGITTPSELDAASVAADIPLLTYGHEDVGISAEKHALIVPPXMHRGRRIHPMPFPDSSIPAQPRPMDPKKDLAVYGYGSVAWKERMEEWKKKQNEKIEVVQHEMVDDDGGKNGDEFDHPDLPKMDEGRQPLWRKLPISPSKINPYRIIIILRIAVLGLFFHYRILHPVNDAYALWMTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKVDYLKDKVDATFVKERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPQLVYVSREKRPGFEHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPTKTCNCWPRWCCLCCGSRKKNRKVKSSAKKKIKSKDGTKQIHALENIEEGIEGIDSEKSSLMSQLKFEKKFGQSPVFITSTLMEDGGVLKGASSTSLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIMLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMSLFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFAELYIFKWTSLLIPPLTLLIXNIIGVIVGVSDAINNGYDSWGPLFGKLFFALWKLHGVW* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3564 1043 Pfam Zinc-binding RING-finger 32 105 IPR027934 -
Amo19g3564 1043 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1039 - -
Amo19g3564 1043 SUPERFAMILY RING/U-box 25 107 - -
Amo19g3564 1043 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 663 IPR029044 -
Amo19g3564 1043 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Amo19g3564 1043 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Amo19g3564 1043 SUPERFAMILY Nucleotide-diphospho-sugar transferases 383 897 IPR029044 -
Amo19g3564 1043 Pfam Cellulose synthase 370 1039 IPR005150 GO:0016020|GO:0016760|GO:0030244
Amo19g3564 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Amo19g3564 1043 PANTHER CELLULOSE SYNTHASE 1 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3564 Amo-Chr19 149933251 149941103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3564 1 1037 Glycosyltransferase AT5G64740 79.079 0.0 1679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3564 K10999 - gmx:100806786 1921.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3564 19 149933251 149941103 Amo19g3564 19 149933251 149941103 ECH
Amo19g3536 19 149393582 149401035 Amo19g3564 19 149933251 149941103 PCT
Amo19g3564 19 149933251 149941103 Amo19g3536 19 149393582 149401035 PCT