Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1308 ATGGATACTAAAGGAAGACTAGTTGCTGGCTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAGACTGCAAGAGTGAGTGGCCTCTATCTAGTGACTGCAGTTACAGAATTAAGTGGACAGATTTGTCAGATCTGTGGGGATGAGTTGGAGGTTACAGTGGATGGGGAGCCATTTGTTGCTTGTAATGAATGTGCTTTCCCTGTGTGCAGACCTTGTTATGAGTATGAAAGAAGAGAGGGTAACCAAGTTTGTCCTCAGTGCAAAACCAGATACAAGCGCATCAAAGGTGAAGCTTCAAACAAATTTTGCTTTGGTGTTTGTATTGTCATAACCTGTTGGTGGATTTGGCTAACACTGCGACTGATATCAGGTAGTGCTAGAGTCGAGGGTGATGAAGAAGAGGATGATACTGATGATTTGGAAAGTGAGTTTGATATTGCAAGCAATATTAGGAGAGATCCTCATCACATTGCTGTGGCCATGCTCTCTGCTCGCCTTAATATCGGCCGTGGTTCGCAGGTGAATGGTTCGGGGATCAACACACCATCAGAGTTTGATGCAGCTTCTGTAGCTGCTGATATTCCTCTCCTGACATATGGTGAAGAGGTTAGTTCATTTTCAGCAGCACTTGATGTCGGCATTGCTGCTGATAAACATGCTCTCATTGTTCCTCCATTCATGGCTCGAGGGAAACGGGTTCATCCTATGCCTTTTCCTGATTCATCTGTACCTGTTCAACCCCGACCTATGGACCCTAAAAAAGATATAGCAGTTTATGGATATGGAAGCGTTGCATGGAAGGAACGGATGGAGGATTGGAAGAAAAAGCAAAGTGATAAACTTCAGGTGGTTAAGCATGAAGGGAAGGATTGTGATGAGCTGGATGATCCAGACTTACCAAAAATGGATGAAGGCAGGCAGCCACTTTGGAGAAAGTTGCCAATTAGTTCAAGCAGGATAAATCCATACAGAATTGTAATTGTACTCCGGATTGCTATTCTTGGCCTCTTTTTCCATTATAGAATTCTCCATCCAGTCAATGATGCATATGCCTTGTGGCTGACATCAGTAATATGTGAAATCTGGTTTGCTGTATCATGGATTTTGGATCAGTTCCCAAAATGGTGCCCAATTGAAAGAGAAACATACCTTGATCGTTTATCACTGAGGTATGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGACGTATTTGTTAGTACAGTGGATCCTATGAAAGAACCTCCACTTATAACTGCAAACACTGTTCTGTCCATCCTTGCTGTGGATTATCCAGTGGACAAGGTTGCATGCTATGTCTCTGATGATGGTGCTGCTATGCTTACATTTGAAGCACTCTCTGAGACATCTGAGTTTGCAAGGAAATGGGTACCATTCTGCAAGAAGTTCAGCATCGAACCTCGGGCTCCCGAATGGTATTTTGCTCAGAAGGTTGACTATCTGAAAGATAAAGTGGATGCAGCATTTATCAGAGAACGTCGTGCTATTAAGAGGGAGTATGAAGAGTTCAAAGTGCGGATTAATGCATTGGTTGCAATGGCACAGAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGTACTCCATGGCCTGGGAACAACGTCAGAGATCATCCCGGAATGATACAAGTTTTTCTTGGTCAAAATGGTGTTCGTGATATTGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCCCGTGAGAAAAGACCTGGATATGAGCACCACAAAAAAGCTGGAGCTATGAATGCTTTGGTGCGAGTCTCGGCAATAATCACAAATGCTCCTTACCTACTGAATGTTGATTGTGATCACTACATAAACAACAGTAAGGCCCTACGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAGATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCGAACCGAAATGTTGTATTCTTTGATATCAATATGAAAGGTTTAGATGGCATCCAAGGACCAATATACGTAGGAACTGGGTGTGTCTTCAGGAGGCAGGCACTTTATGGATATGATGCCCCTACTACAAAGAAACCACCTGGGAAGACATGTAACTGTTGGCCTAAATGGTGCTGCTGTCTGTGTTGTGGATCTAGGAAGAAAAAGACTAAAGCAAAGTCTAGTGTGAGAAAGAAGATAAAGAACAAGGATGGTGGAAAGGAAATGCATGCACTAGAAAATATTGAAGAGGAAATTGAAGGAATTGACAATGAGAAGTCATCAGCAATGTCTCAACTAAAGTTTGAGAAAAAATTTGGGCAATCATCTGTTTTCATAGCGTCAACACTTATGGAAGATGGGGGTATTCCCAAAGCAGCATCTTCTGCAACACTCTTGAAAGAATCCATCCATGTAATTAGTTGTGGTTATGAAGATAAGACAGAATGGGGTAAAGAGGTTGGTTGGATTTATGGCTCTGTTACAGAAGATATTTTAACAGGTTTCAAGATGCACTGTCACGGATGGCGATCTGTGTACTGCATGCCAAAAAGACCTGCTTTTAAGGGTTCGGCTCCTATAAATCTCTCGGATCGTCTGCATCAAGTTCTTCGGTGGGCACTTGGATCTGTTGAGATCCTTTTGAGTAGGCATTGTCCTATATGGTATGGTTATGGTTGTGGCTTGAAATGGCTGGAACGGTTCTCTTACATAAACTCAGTTGTTTATCCTCTGACTTCAATTCCCTTACTCGCCTACTGCACTTTGCCAGCCGTTTGTCTACTCACTGGGAAGTTCATAGTCCCTGAGATAAGCAATTATGCCAGTATCATTTTCATGGGCCTCTTCATATCTATAGCTGCCACTAGCATACTGGAAATGCAATGGGGAGGTGTTGGTATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTCATTGGTGGTGCCTCCTCGCATCTGTTTGCTCTCTTTCAGGGTCTGCTCAAAGTTCTGGCAGGAGTTAACACTAACTTCACTGTCACATCCAAAGCTGCAGATGATGGAGAGTTTGCTGAACTCTACATCTTTAAGTGGACATCCTTGTTGATCCCTCCTTTGACTCTGCTAATCATTAACATTATTGGAGTCGTTGTTGGTGTCTCAGATGCTATAAACAATGGCTATGATTCATGGGGTCCTTTGTTTGGTAAGCTATTTTTTGCCCTTTGGGTCATTGTCCATCTTTACCCTTTCCTCAAGGGAGTAATGGGAAAACAAGAAGGTGTTCCCACCATCATTTTGGTTTGGGCTATTCTTCTCGCTTCAATCTTCTCACTGCTGTGGGTGAGAATCAACCCATTTTTGTCCAAAAATGACATTGTGTTGGAAATTTGTGGATTGAATTGTGACTAA 3405 0.4253 MDTKGRLVAGSHNRNEFVLINADETARVSGLYLVTAVTELSGQICQICGDELEVTVDGEPFVACNECAFPVCRPCYEYERREGNQVCPQCKTRYKRIKGEASNKFCFGVCIVITCWWIWLTLRLISGSARVEGDEEEDDTDDLESEFDIASNIRRDPHHIAVAMLSARLNIGRGSQVNGSGINTPSEFDAASVAADIPLLTYGEEVSSFSAALDVGIAADKHALIVPPFMARGKRVHPMPFPDSSVPVQPRPMDPKKDIAVYGYGSVAWKERMEDWKKKQSDKLQVVKHEGKDCDELDDPDLPKMDEGRQPLWRKLPISSSRINPYRIVIVLRIAILGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAAFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAIITNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPTTKKPPGKTCNCWPKWCCCLCCGSRKKKTKAKSSVRKKIKNKDGGKEMHALENIEEEIEGIDNEKSSAMSQLKFEKKFGQSSVFIASTLMEDGGIPKAASSATLLKESIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLLAYCTLPAVCLLTGKFIVPEISNYASIIFMGLFISIAATSILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFAELYIFKWTSLLIPPLTLLIINIIGVVVGVSDAINNGYDSWGPLFGKLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASIFSLLWVRINPFLSKNDIVLEICGLNCD* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1308 1134 SUPERFAMILY Nucleotide-diphospho-sugar transferases 419 934 IPR029044 -
Apr6g1308 1134 SUPERFAMILY RING/U-box 37 100 - -
Apr6g1308 1134 CDD mRING-HC-C4C4_CesA_plant 43 93 - -
Apr6g1308 1134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 146 IPR013083 -
Apr6g1308 1134 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 124 1133 - -
Apr6g1308 1134 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 24 100 - -
Apr6g1308 1134 Pfam Cellulose synthase 406 1123 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr6g1308 1134 PANTHER CELLULOSE SYNTHASE 124 1133 - -
Apr6g1308 1134 PANTHER CELLULOSE SYNTHASE 24 100 - -
Apr6g1308 1134 Coils Coil 750 770 - -
Apr6g1308 1134 ProSiteProfiles Zinc finger RING-type profile. 45 91 IPR001841 -
Apr6g1308 1134 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 552 702 IPR029044 -
Apr6g1308 1134 Pfam Zinc-binding RING-finger 37 101 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1308 Apr-Chr6 18451785 18459245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1308 1 1133 Glycosyltransferase AT2G21770 75.416 0.0 1744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1308 K10999 - gmx:100798759 1984.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1308 6 18451785 18459245 Apr6g1308 6 18451785 18459245 ECH
Apr6g1308 6 18451785 18459245 Apr8g2101 8 31550765 31557332 PCT