Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04292 ATGGACACTAATGGAAGACTAGTTACAGGTTCACATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAAACTGCAAGAGTGAATGCTGTTACAGAATTGAGTAATCAAATTTGCCAGATCTGTGGTGATGAGATAGAGGTCACAGTGGATGGTGAACCATTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGCAGACCTTGTTATGAGTATGAAAGAAGAGAGGGGAACCAAGCATGTCCTCACTGCAAAACCAAATACAAACGCATAAAGGGTAGTCCAAGAGTTGAGGGTGATGAAGAAGAGGATGATGCTGATGACTTGGAAAATGAGTTTGACATCGGAAGCAATATCAGACACGATGTCCCTCATCACATTGTTGAGGTCATGCTCTCCTCTAGCCTCAACAATATCGTCCGGAGTTCACAAATGAATACTTCAGGAATCACCACGCCGTCAGAGCTTGACTCAGCTTCTGTCGCTGCTGATATCCCTCGTCTGACATATGATCATGAGGATCTTGGGATTTCTTCTGATAAACGTGCTCTCATTATCCCTCCGTTCAAGCCCCGTGGGAAACGTGTATATCCTATGCCCTTTCCTAGACCTATGGATCCTAATAAAGATTTAGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAGAGAGTGGAAGAGTGGAAGAAAAAGCGGAATGAAAAATTAGAGGTGGTTAAGCACAAAGTCGGTAACAGCATTGATGAAAATTGTGATGAGGTTGATGACCCTGATTTGCCTAAAATGGATGAAGGAAGACAACCACTGTGGAGGAAGTTACCAATTAGTCCAAGCAAGATAAATCCGTATCGAATCATAATAGTACTCCGAATCGCTGTTCTTGGCCTCTTTTTCCATTACAGAATTCTCCATCCGGTCAACGATGCATACACATTGTGGCTGACATCAGTAATATGTGAAATTTGGTTTGCTGTGTCATGGATTTTGGATCAGTTTCCAAAATGGTCTCCAATTGAGCGAGAAACATACCTCGATCGTTTATCGCTGAGGTACGAGAAAGAAGGAAAGAAGTGTGAATTAGCTGATATTGACGTATTTGTTAGTACCGTGGATCCTATGAAAGAGCCTCCTCTTATTACTGCAAACACAGTTTTGTCCATCCTAGCCGTAGATTATCCGGTGGAAAAAGTGGCATGCTATGTCTCAGACGACGGTGCAGCTATGCTAACATTTGAAGCACTTTCAGAAACTTCAGAGTTTGCAAGAAAATGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCGCGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTATCTGAGAGACAAAGTGGATGCGACATTCGTCAAGGAGCGGCGTGCTATTAAGAGGGACTCTGAAGAGTTTAAAGTGAGGATAAATGCATTGGTTGCAATGGCACAAAAGATTCCTGAGGATGGTTGGACAATGCAAGATGGGACTCCATGGCCTGGAAACAATGTTATCGACCATCCAGGAATGATTCAGGTTTTCCTTGGACAAAATGGTGTTCGTGATATTGAAGGGAATGAGTTACCTCGTCTTGTTTATGTGTCACGTGAGAAAAGACCTGGATTTGAACACCATAAAAAAGCCGGGGCTATGAATGCCTTGGTGCGAGTTTCTGCAATCATATCAAATGCTCCTTACATGCTAAATGTGGACTGTGATCACTACATAAACAACAGTAAGGCACTTCGCGAAGCCATGTGTTTCATGATGGATCCTACATcgggaaaaaaaatatgttacgTGCAATTTCCTCAAAGATTTGATGGAATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTATTCTTTGATATCAACATGAAAGGTTTAGATGGCATCCAAGGACCAATTTATGTTGGAACTGGTTGTGTCTTCAGGAGGCTAGCCCTCTATGGATATGATGCCCCGGCTACGAAGAAACCACCGAGGAAGACTTGTAACTGCTGGCCAAAATGGTGCTTCATGTGTTGTGGATCAAGAAAGAAGTATAGGAAAGTTAATTCTGGtctgagaaagaagaaaatgaataagGATGCCGCAAAACAAATACATGCGCTAGAAACTATAGAAGAGGGAATTGAAGGAATCGACAATGAGAAGTCATCAATAATGTCTCAACTAaagtttgagaaaaaatatGGACAATCATCTGTTTTCATAGCTTCAACGCTTATGGAAGACGGAGGCATACTAAAGGCGGCTACTTCTGCGTCACTCTTGAAAGAAGCCATCCATGTCATCAGTTGCGGTTATGAAGACAAAACAGAGTGGGGGAAAGAGGTTGGATGGATATATGGTTCAGTTACGGAAGATATTTTAACAGGTTTCAAGATGCACAGTCATGGTTGGCGGTCGGTATACTGCATGCCTAAAAGGCCTGCATTTAAAGGTTCGGCTCCTATCAACCTCTCTGATCGTCTGCATCAAGTTCTTCGGTGGGCGCTTGGATCTGTTGAGATCATGTTGAGTAGGCATTGTCCTATTTGGTATGGATATGGTTGTGGCTTGAAATGGTTGGAGCGCTTTTCTTACATAAACTCGGTAGTTTACCCTCTGACATCAATTCCTTTAATTGCCTACTGCACCTTGCCTGCTGTGTGTCTTCTTACTGGGAAGTTCATAGTGCCTGAGATTAGCAACTATGCTAGTATCATTTTCATTGCACTTTTCATCTCTATAGCTGCCACCAGCATCCTAGAAATGAAATGGGGAGGTGTTGGCATACATGACTGGTGGAGGAATGAACAATTTTGGGTCATCGGCGGTGCCTCCTCACACCTATTTGCTCTATTTCAAGGCCTACTTAAGGTTCTAGCAGGAGTAAACACAAACTTCACTGTCACATCGAAAGCCGCCGATGATGGAGATTTTGCAGACCTCTATATCTTCAAGTGGACATCATTGTTAATCCCTCCTTTAACCTTGCTTATCCTAAACATAATTGGAGTTATTGTTGGTGTTTCAGATGCAATAAACAATGGTTATGATCAGTGGCGGATCTAG 3063 0.4182 MDTNGRLVTGSHNRNEFVLINADETARVNAVTELSNQICQICGDEIEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPHCKTKYKRIKGSPRVEGDEEEDDADDLENEFDIGSNIRHDVPHHIVEVMLSSSLNNIVRSSQMNTSGITTPSELDSASVAADIPRLTYDHEDLGISSDKRALIIPPFKPRGKRVYPMPFPRPMDPNKDLAVYGYGSVAWKERVEEWKKKRNEKLEVVKHKVGNSIDENCDEVDDPDLPKMDEGRQPLWRKLPISPSKINPYRIIIVLRIAVLGLFFHYRILHPVNDAYTLWLTSVICEIWFAVSWILDQFPKWSPIERETYLDRLSLRYEKEGKKCELADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLRDKVDATFVKERRAIKRDSEEFKVRINALVAMAQKIPEDGWTMQDGTPWPGNNVIDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAIISNAPYMLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRLALYGYDAPATKKPPRKTCNCWPKWCFMCCGSRKKYRKVNSGLRKKKMNKDAAKQIHALETIEEGIEGIDNEKSSIMSQLKFEKKYGQSSVFIASTLMEDGGILKAATSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHSHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIMLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPEISNYASIIFIALFISIAATSILEMKWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGDFADLYIFKWTSLLIPPLTLLILNIIGVIVGVSDAINNGYDQWRI 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04292 1020 SUPERFAMILY RING/U-box 27 107 - -
Tsu01g04292 1020 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 507 659 IPR029044 -
Tsu01g04292 1020 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Tsu01g04292 1020 PANTHER CELLULOSE SYNTHASE 1 1018 - -
Tsu01g04292 1020 Pfam Cellulose synthase 363 1018 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tsu01g04292 1020 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1018 - -
Tsu01g04292 1020 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 905 IPR029044 -
Tsu01g04292 1020 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Tsu01g04292 1020 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Tsu01g04292 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04292 Tsu-Chr1 50690976 50696257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04292 1 1018 Glycosyltransferase AT5G64740 76.602 0.0 1605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04292 K10999 - gmx:100806786 1860.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04292 01 50690976 50696257 Tsu01g04292 01 50690976 50696257 ECH