Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1546 ATGGATACCAAAGGAAGACTCGTGGCGGGTTCACACAACCGGAACGAGTTTGTTCTGATCAATGCTGATGAGATTGGACGAGTGACTTCCGTGAAAGAATTGAGTGGGCAGATTTGTCAGATTTGTGGGGATGAGATAGAGATTACTGTGGATGGGGAGCCATTCGTTGCCTGTAATGAATGTGCATTCCCTGTATGCAGACCCTGCTACGAGTATGAAAGAAGGGAGGGTAATCAAGCTTGCCCTCAATGCAAAACCAGATACAAACGCATCAAAGGTAGTCCCAGAGTTGAAGGGGATGAAGAGGAAGATGACATTGATGATTTGGAGAATGAGTTTGATTTCAGAAGCAATTACAGTAGGGATCCTCATCAGGTTGCAGAGGCTATGCTCTCTGCTCACCTGAACATCGGCAGCCATGCCCATACTTCAGGGATTAGTACGCCTTTGGATCTGGATTCTTCATCAGTCCCTTCAGGAATCCCTCTTCTGACCTATGGCCAATATGATGTCGGGATTTCCTCTGATAAGCACGCCCTTATCATTCCTCCATTCATGGGGCGTGGAAAACGAGTCCATCCTATGCCATTTCCTGATTCTTCTATGTCCTTGCCACCCAGACCAATGGATCCTAAGAAAGACCTGGCAGTATATGGGTATGGAAGTGTTGCGTGGAAGGACCGAATGGAAGAGTGGAAGAAAAAGCAGAATGATAAACTTCAGGTTGTTAAGCACCAAGGAGGAAATGATGGTGGAAACTTTGATGAAGATGAACTGGATGATCCTGATTTGCCCAAGATGGATGAAGGCAGGCAACCTCTATCTAGAAAAATACCAATTCCTTCAAGCAAGATAAATCCATACAGAATCATAATTATACTCCGGCTTGTGATTCTTGGCTTCTTCTTTCATTATAGAATCCTCCACCCGGTTAATGATGCATATGCATTATGGTTAACATCAGTTATTTGTGAAATATGGTTTGCTGTATCATGGATACTGGATCAGTTCCCAAAGTGGTACCCAATCGAGCGGGAAACATACCTTGATAGGCTATCACTGAGGTATGAAAAAGAAGGGAAGCCATCTGAATTAGCTGATATAGACATATTCGTAAGTACAGTTGATCCCATGAAAGAACCTCCACTTATCACAGCAAACACAGTTCTGTCAATCCTTGCAGTAGATTATCCAGTCGAGAAAGTTGCATGCTATGTCTCAGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCTGAGACATCTGAGTTTGCTAGGAGGTGGGTCCCATTCTGTAAGAAGTTCAGCATTGAGCCGAGGGCCCCAGAATGGTACTTTGCTCAGAAGGTTGACTATCTGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAGAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTCGTCTAGTTTATGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACAAAAAAGCTGGGGCAATGAATGCTTTGATGCGAGTCTCAGCAATCATCTCTAATGCTCCTTACCTACTGAACGTGGACTGTGATCACTATATAAACAACAGTAAGGCCCTTCGTGAAGCCATGTGCTTCATGATGGACCCCACATCAGGAAAGAAAATCTGTTATGTACAGTTTCCTCAAAGGTTTGATGGGATTGATCGCAATGATAGATACTCAAATCGCAACGTTGTATTCTTTGATATCAATATGAAAGGTTTGGATGGGATCCAGGGACCAATTTATGTTGGAACTGGCTGTGTCTTCAGACGGCAGGCACTCTATGGATATGATGCCCCTGTCAATAAGAAACCCCCAGGAAAGACGTGTAATTGTTGGCCAAAATGGTGCTGCTTGTGTTGTGGATCAAGGAAGAAAAACAAGAAAGTGAAGTCAACTGACAAAAAGAAGAAGATGAAAAACAGGGAAGCTTCAAAGCAAATACATGCACTCGAAAATATTGAAGAGGGAATTGAAGGAATAGATAATGACAGATCATTGCTCATGCCCCAAGTGAAATTTGAGAAAAAATTTGGACAGTCTCCGGTTTTTATAGCTTCCACGCTTTTAGAAGAAGGTGGTGTTCCAAAAGGAGCAACCACTGCTTCACTTTTGAAAGAAGCCATCCATGTCATTAGCTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGCTCTGTTACAGAGGATATATTAACAGGATTCAAGATGCAATGCCATGGTTGGCGATCAGTGTACTGCATACCCAAGAGGCCGGCATTTAAGGGGTCAGCTCCCATTAACCTGTCAGATCGTTTACACCAGGTTCTACGTTGGGCACTTGGATCTGTTGAGATTTTCTTCAGTAGGTATTGCCCTATATGGTATGGCTATGGAGGTGGTTTGAAATGGTTGGAGCGCTTCTCTTATATCAACTCAGTTGTTTATCCGTGGACGTCCATTCCCTTGATTGCCTACTGTACCTTGCCGGCTTTCTGTCTCCTCACTGGGAAGTTCATTGTCCCCGAGATTAGCAACTATGCCAGTATTATTTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTGTCCTTGAGATGCAGTGGGGACGGGTTGCCATAGATGACTGGTGGAGAAATGAGCAGTTCTGGGTGATTGGTGGTGCTTCATCACATCTGTTTGCTCTCTTCCAAGGTCTGCTTAAGGTTTTGGCAGGTGTTAACACAAACTTCACTGTTACATCCAAAGGAGGAGATGATGGAGAGTTTTCGGAGCTCTACCTTTTTAAGTGGACATCTTTGTTGATCCCTCCCCTGACGTTACTGATCCTGAATATAATTGGGGTCATGGTTGGGATTTCAGATGCCATCAATAACGGTTATGAAGAATGGGGCCCTCTATTTGGTAAGCTGTTCTTTGCCTTATGGGTCATTGTTCACCTGTACCCCTTCCTCAAGGGGTTAATGGGGAAACAAGATAGGCTTCCCACCATTATTGTTGTGTGGTCAATTCTTCTAGCCTCAATCTTCTCACTTCTATGGGTCAGAGTCAACCCATTTGTATCAAAAGGTGGTATTGTATTAGAAGTCTGTGGATTGGATTGTGACTAG 3291 0.4409 MDTKGRLVAGSHNRNEFVLINADEIGRVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDFRSNYSRDPHQVAEAMLSAHLNIGSHAHTSGISTPLDLDSSSVPSGIPLLTYGQYDVGISSDKHALIIPPFMGRGKRVHPMPFPDSSMSLPPRPMDPKKDLAVYGYGSVAWKDRMEEWKKKQNDKLQVVKHQGGNDGGNFDEDELDDPDLPKMDEGRQPLSRKIPIPSSKINPYRIIIILRLVILGFFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARRWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVHPEFVRERRAMKREYEEFKIRINALVSMAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGHNGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNALMRVSAIISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRNDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVNKKPPGKTCNCWPKWCCLCCGSRKKNKKVKSTDKKKKMKNREASKQIHALENIEEGIEGIDNDRSLLMPQVKFEKKFGQSPVFIASTLLEEGGVPKGATTASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMQCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRYCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIAYCTLPAFCLLTGKFIVPEISNYASIIFMALFISIAATGVLEMQWGRVAIDDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFSELYLFKWTSLLIPPLTLLILNIIGVMVGISDAINNGYEEWGPLFGKLFFALWVIVHLYPFLKGLMGKQDRLPTIIVVWSILLASIFSLLWVRVNPFVSKGGIVLEVCGLDCD* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1546 1096 FunFam Cellulose synthase 485 659 - -
Vvi18g1546 1096 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Vvi18g1546 1096 Pfam Cellulose synthase 368 1084 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi18g1546 1096 MobiDBLite consensus disorder prediction 237 275 - -
Vvi18g1546 1096 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 662 IPR029044 -
Vvi18g1546 1096 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Vvi18g1546 1096 FunFam Cellulose synthase 21 112 - -
Vvi18g1546 1096 CDD mRING-HC-C4C4_CesA 37 87 - -
Vvi18g1546 1096 SUPERFAMILY RING/U-box 27 111 - -
Vvi18g1546 1096 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Vvi18g1546 1096 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 272 1063 - -
Vvi18g1546 1096 SUPERFAMILY Nucleotide-diphospho-sugar transferases 381 914 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1546 Vvi-Chr18 19565754 19573180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1546 1 1095 Glycosyltransferase AT5G64740 80.146 0.0 1801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1546 K10999 - vvi:100255463 2196.78