Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3639 ATGTTAGTTTCAATGGACACTAATGGAAGATTAGTTGCAGGATCACATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGACACTGCAAGAGTGAATGCTGTGACAGAATTGAGTGGACAAATTTGCCAGATCTGTGGGGATGAGATAGAGTTTACAGTGGATGATGAACCTTTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGTAGACCTTGCTATGAGTATGAAAGACGAGAAGGGAACCAAGCTTGTCCTCACTGCAAAACTAAATACAAACGCATAAAGGGTAGTCCAAGAGTTGAGGGTGACGAAGAAGAGGATGGGATTGATGATTTGGAAAATGAGTTTGATATTGGAAGCAATATCAAACATGACCCTCATCACATTACTGAGGCCATGTTCTTTTCTCACCTCAACAATATCGGTCGGAGTTCACAAATGAATGCTTCAAGAATCACCACGCCATCAGAGTTTGACACGGCTTCTGTGGCTGCTGATATCTCTCTCCTGACATATGATCATGAGGATCCTGGGATTTCTTCTGATAAACATGCTCTCATTATCCCTCCATACAAGCTCCGCGGGAAACGGGTTCATCCTATGCCTTTTCCTGATTCATTTGTGCCGGTTCTACCAAGACCCATGGATCCTAATAAAGATTTGGCTGTTTATGGCTATGGAAGTGTTGCATGGAAAGAAAGAGTGGAGGAATGGAAGAAAAAGCAGAATGAAAAATTAGAGGTGGTTAAGCACGAAGGTGACAACAATGTTGATGAGTTTAATGATCCCGATTTGCCAAAAATGGATGAAGGAAGGCAACCGCTATGGAGGAAGTTACCAATCAGTCCAAGCAAGATAAATCCATATCGAATCATTATAGTACTCCGGATCGCTGTTCTTGCTCTCTTTTTTCATTACAGAATTCTCCATCCGGTCAACGATGCATATGCATTGTGGTTGACATCAGTAATATGTGAAATTTGGTTTGCTGTATCATGGATTTTGGATCAGTTTCCAAAATGGTCTCCAGTTGAGCGAGAAACATACCTTGATCGTTTATCACTGAGGTACGAGAAAGAAGGAAAGCCGTGTGAATTATCCGATATTGACATATTTGTTAGTACTGTGGATCCTATGAAAGAGCCTCCTCTTATAACTGCAAACACAGTTCTGTCCATCCTAGCAGTAGATTATCCGGTGGAAAAAGTGGCGTGCTATGTCTCAGACGACGGTGCAGCTATGCTAACATTTGAAGCCCTTTCAGAAACTTCAGAGTTTGCAAGAAAATGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCGCGGGCTCCTGAGTGGTATTTTGCTCAGAAGGTTGACTATCTAAAAGACAAAGTGGACGCGGCTTTCATCAAGGAGCGTCGTGCTATTAAGAGGGACTATGAAGAGTTAAAAGTGAGGATTAATGCATTGGTTGCAATGGCGCAAAAGGTTCCTGAGGATGGATGGACAATGCAAGATGGGACACCTTGGCCTGGAAACAATGTCAACGATCATCCTGGAATGATTCAGGTTTTCCTTGGACAAAATGGTGTTCGCGATATTGATGGGAACGAGTTACCTCGTCTTGTTTATGTGTCTCGTGAAAAAAGACCTGGATTCGAACACCACAAAAAAGCTGGTGCTATGAATGCCTTGGTGCGAGTCTCGGCAGTCATATCAAATGCTCCTTACATGCTAAATGTTGATTGTGACCACTACATAAACAACAGTAAGGCCCTTCGTGAAGCCATGTGTTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTGCAATTTCCTCAAAGATTTGATGGAATTGATCGTCATGATAGATACTCAAATCGTAATGTTGTATTCTTTGATATCAATATGAAAGGCTTAGATGGCATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTCAGGAGGCAAGCACTCTATGGATATGATGCTCCTGCCAAGAAGAAACCACCAGGGAAGACATGTAATTGTTGGCCAAAATGGTGCTTCATGTGTTGTGGATCAAGAAAGAAGAATAGGAAAGTGAACTCCGGTCCAAGAAAGAAGATAAGGGATAAGGACGTCGCAAAACAAATACATGCACTAAAAAATATAGAAGAGGGAATTGAAGGAATTGACAAGAAAAAGTCACCGCTAATATCGCAACTAAAATTTGAGAAATTTTTTGGACAATCGTCTGTTTTCATAGCTTCAACGCTTATGGAAGATGGAGGCATTCTAAAAGCAGCAACTTCTGCATCACTCTTGAAAGAAGCCATCCATGTTATCAGTTGCGGTTACGAAGACAAGACTGAGTGGGGAAAAGAGGTTGGATGGATATATGGTTCCGTCACAGAAGATATTTTAACAGGTTTTAAGATGCATAGTCATGGTTGGCGATCGGTATACTGCATGCCTAAAAGGCCTGCTTTTAAAGGTTCAGCTCCTATAAACCTCTCGGATCGTCTGCATCAAGTTCTTCGGTGGGCGCTTGGATCTGTTGAGATTCTGTTAAGTAGGCACTGTCCTATTTGGTATGGATATGGCTGTGGCTTGAAATGGTTGGAACGTTTGTCTTACATAAACTCGGTTGTTTATCCTTTGACGTCAATTCCCTTGATTGTCTACTGCACCTTGCCAGCTGTGTGTCTTCTAACTGGGAAGTTCATAGTTCCTGAGATTAGCAACTATGCTAGTATCATTTTCATTGCACTTTTCATCTCTATAGCTGCAACCGGCATCCTAGAAATGCAATGGGGAGGTGTTGGTATACAAGACTGGTGGAGGAATGAACAATTCTGGGTCATCGGGGGCGCCTCCTCACACCTTTTTGCTCTCTTTCAAGGTTTGCTTAAGGTTCTAGCAGGGGTTAACACAAACTTCACTGTCACATCCAAAGCCGCCGATGATGGAGACTTTGCTGACCTCTACATCTTCAAGTGGACATCATTGTTAATCCCTCCTTTAACCTTGCTTATCCTAAACATAATTGGAGTTATTGTTGGTGTTTCAGATGCAATAAACAATGGCTATGATTCATGGGGTCCATTATTTGGCAAGTTATTTTTTGCTCTATGGGTTATTTTACATCTTTATCCATTTCTTAAGGGTGTTATGGGAAAACAAGAAGGTGTTCCTACCATCATTTTGGTTTGGGCTATTCTTCTGGCTTCAATCTTTTCACTTCTATGGGTTAGGATCAACCCCTTTGTGTCCAAAAATGACATTGTGTTGGAACTTTGTGGGTTGAATTGTGATTGA 3294 0.4168 MLVSMDTNGRLVAGSHNRNEFVLINADDTARVNAVTELSGQICQICGDEIEFTVDDEPFVACNECAFPVCRPCYEYERREGNQACPHCKTKYKRIKGSPRVEGDEEEDGIDDLENEFDIGSNIKHDPHHITEAMFFSHLNNIGRSSQMNASRITTPSEFDTASVAADISLLTYDHEDPGISSDKHALIIPPYKLRGKRVHPMPFPDSFVPVLPRPMDPNKDLAVYGYGSVAWKERVEEWKKKQNEKLEVVKHEGDNNVDEFNDPDLPKMDEGRQPLWRKLPISPSKINPYRIIIVLRIAVLALFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWSPVERETYLDRLSLRYEKEGKPCELSDIDIFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAAFIKERRAIKRDYEELKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVNDHPGMIQVFLGQNGVRDIDGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVISNAPYMLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKPPGKTCNCWPKWCFMCCGSRKKNRKVNSGPRKKIRDKDVAKQIHALKNIEEGIEGIDKKKSPLISQLKFEKFFGQSSVFIASTLMEDGGILKAATSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHSHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERLSYINSVVYPLTSIPLIVYCTLPAVCLLTGKFIVPEISNYASIIFIALFISIAATGILEMQWGGVGIQDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGDFADLYIFKWTSLLIPPLTLLILNIIGVIVGVSDAINNGYDSWGPLFGKLFFALWVILHLYPFLKGVMGKQEGVPTIILVWAILLASIFSLLWVRINPFVSKNDIVLELCGLNCD* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3639 1097 SUPERFAMILY Nucleotide-diphospho-sugar transferases 383 915 IPR029044 -
Mtr1g3639 1097 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 512 665 IPR029044 -
Mtr1g3639 1097 SUPERFAMILY RING/U-box 30 111 - -
Mtr1g3639 1097 CDD mRING-HC-C4C4_CesA_plant 41 91 - -
Mtr1g3639 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 116 IPR013083 -
Mtr1g3639 1097 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 5 1096 - -
Mtr1g3639 1097 Pfam Zinc-binding RING-finger 35 109 IPR027934 -
Mtr1g3639 1097 ProSiteProfiles Zinc finger RING-type profile. 43 89 IPR001841 -
Mtr1g3639 1097 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 1096 - -
Mtr1g3639 1097 Pfam Cellulose synthase 370 1087 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3639 Mtr-Chr1 48017849 48023908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3639 5 1096 Glycosyltransferase AT2G21770 77.000 0.0 1748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3639 K10999 - gmx:100798759 1937.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3639 1 48017849 48023908 Mtr1g3639 1 48017849 48023908 ECH