Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00974 ATGGACACCAACGGGAGACTAATAGCCGGGTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAGACTGCAAGAGTGACTGCTGTCACAGAATTAAGTGGTCAAATTTGTCAGATCTGTGGGGATGAGTTAGAAGTTACAGTGATCGGGGAGCCATTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGTAACCAAGTTTGTCCTCAGTGTAAAACGAGATATAAGCGCATCAAAGGTAGTGCTAGAGTTGAGGGTGATGAAGAAGAGGATAACACTGATGATTTGGAAAGCGAGTTTGATTTTGGAGGCAATCTTAGGCGAGATCATCATCACATGGCCGAGGCTATGTTCTCCACACGCCTTAACTATGGTTCAGTCAATGGTTCAGTCCACACACCATCAGAGTTTGATGCAGCTTCTGTGGCTTCTGAGATCCCTCTACTGACATATGGTCAAGAGGATGTGGGCATTTCTGCTGATAAACATGCACTCATTCTTCCTCCATTCATGGCTCGAGGGAAACGGATTTATCCTATGCCTTTTCCTGATTCATCTGTACCTGTTCAACCTAGACCTATGGATCCTAAAAGGGATATAGCAGTTTATGGATATGGAAGTGTTGCATGGAAGGAAAGGATGGAGGATTGGAAGAAAAAGCAAAGTGAAAAACTTCAGGTGGTTAGGCATGAAGGGGGTAAGGATAGTGATGATCTGGATGATCCTGACTTGCCAAAAATGGATGAAGGAAGACAACCACTGTGGAGAAAGCTGCCAATTAGTTCAAGCAGGATAAATCCATACAGAATCATAATAGTACTGCGGATTGTCATTCTTGGCCTCTTTTTCCATTATAGAATTCTCCATCCAGTCAATGATGCATATGCATTGTGGCTCACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTTGATCAGTTCCCAAAATGGAGCCCAATAATGCGGGAAACATACCTTGATCGTTTATCTCTAAGGTACGAGAAAGAAGGAAAACCATCTCAGTTAGCTGATATAGATGTGTTTGTCAGTACAGTGGATCCTATGAAAGAGCCTCCGCTTATAACTGCAAACACAGTTCTGTCCATCCTTGCTGTGGATTATCCAGTGGAGAAGGTTGCATGTTACGTCTCAGATGATGGTGCTGCAATGCTTACATTTGAAGCACTCTCTGAGACTTCTGAGTTTGCAAGGAAATGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCACGGGCTCCAGAATGGTATTTTGCACAGAAGGTTGACTACTTGAAGGATAAAGTTGATGCAGGATTTATAAGAGAACGTCGTGCCATTAAGAGGGAGTATGAAGAGTTTAAAGTGAGGATTAATGCATTGGTGGCAATGGCACAGAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGTACACCATGGCCTGGGAACAATGTTAGAGATCATCCTGGAATGATACAAGTTTTCCTTGGTCAAAATGGTGTTCGTGACATTGAAGGAAATGAATTACCTCGACTTGTCTATGTGTCCCGCGAGAAAAGACCTGGATATGAGCACCACAAGAAAGCTGGAGCTATGAATGCTTTGGTGAGAGTCTCAGCAATAATCACAAATGCGCCTTACCTACTGAATGTTGATTGTGATCACTACATAAATAATAGTAAGGCCCTTCGTGAATCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAGTTTCCCCAAAGATTTGATGGGATTGATCGTAATGATAGATACTCAAATCGCAATGTTGTATTCTTTGATATCAATATGAAAGGTTTGGATGGCATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTCAGGAGGCAGGCATTTTATGGATATGACGCCCCTGCTACGAAGAAACCACCAAGGAAGACATGTAACTGTTGGCCTAAATGGTGCTGCGGTCTGTGTTGTGGATCTAGTAAGAGAAAGGTTAAATCAAAGGCAAGTGTGAAAAAGATGGTAAAGAATAAGGATGACACTAAGCAAATGCATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATTGACAACGAGAAGTCCTCACTAATGTCTCAACAAAAGTTTGAGAAGAAATATGGGCAATCATCTGTTTTCATAGCTTCAACACTCATGGAAGATGGGGGTATTCCAAAAGCAGCAAGTTCTGCGACACTCTTGAAAGAAGCCATCCATGTAATTAGTTGTGGATATGAGGATAAGACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGGTCAGTTACAGAAGATATTTTAACAGGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTGTACTGCATGCCCAAAAGGCCTGCTTTCAAGGGTTCAGCTCCTATAAATCTCTCAGATCGTTTGCATCAAGTTCTTCGATGGGCGCTTGGATCTGTTGAGATCTTTTTCAGTAGGCATTGTCCTATTTGGTATGGTTATGGCGGTGGCTTGAAATCGCTGGAACGATTCTCTTACATAAACTCAGTTGTTTATCCTCTGACTTCAGTTCCCTTAATTGCCTACTGTGCATTGCCAGCTGTCTGTCTGCTCACTGGAAAATTCATTGTCCCTGAGATAAGTAACTATGCCAGTATCATTTTCATGGCCCTATTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTTGGTATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTTATTGGTGGTGCCTCCTCACATCTGTTTGCTCTCTTTCAGGGTTTGCTCAAAGTTCTGGCAGGAATTAACACAAACTTCACTGTCACATCGAAAGCTGCAGACGATGGAGATTTTGCTGAACTCTACATCTTCAAGTGGACATCCTTGTTGATCCCTCCCTTGACCCTACTAATCATAAACATAATTGGAGTCATTGTTGGTGTGTCGGATGCTATAAATAATGGCTATGATTCATGGGGTCCTTTGTTTGGCAGGCTATTTTTTGCCCTTTGGGTCATTGTCCATCTTTACCCTTTCCTCAAGGGTGTCATGGGAAAACAGGAAGGAGTTCCTACCATCATATTGGTCTGGGCCATTCTTCTGGCTTCAATCTTAACACTCCTTTGGGTGAGGATCAACCCATTTTTGGCCAAAAATGATATTGTGCTGGAAATTTGTGGATTGAAGTGTGACTAA 3270 0.426 MDTNGRLIAGSHNRNEFVLINADETARVTAVTELSGQICQICGDELEVTVIGEPFVACNECAFPVCRPCYEYERREGNQVCPQCKTRYKRIKGSARVEGDEEEDNTDDLESEFDFGGNLRRDHHHMAEAMFSTRLNYGSVNGSVHTPSEFDAASVASEIPLLTYGQEDVGISADKHALILPPFMARGKRIYPMPFPDSSVPVQPRPMDPKRDIAVYGYGSVAWKERMEDWKKKQSEKLQVVRHEGGKDSDDLDDPDLPKMDEGRQPLWRKLPISSSRINPYRIIIVLRIVILGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWIFDQFPKWSPIMRETYLDRLSLRYEKEGKPSQLADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAGFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAIITNAPYLLNVDCDHYINNSKALRESMCFMMDPTSGKKICYVQFPQRFDGIDRNDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGYDAPATKKPPRKTCNCWPKWCCGLCCGSSKRKVKSKASVKKMVKNKDDTKQMHALENIEEGIEGIDNEKSSLMSQQKFEKKYGQSSVFIASTLMEDGGIPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKSLERFSYINSVVYPLTSVPLIAYCALPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGINTNFTVTSKAADDGDFAELYIFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASILTLLWVRINPFLAKNDIVLEICGLKCD 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00974 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Phco5g00974 1089 FunFam Cellulose synthase 21 112 - -
Phco5g00974 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 265 1050 - -
Phco5g00974 1089 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Phco5g00974 1089 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Phco5g00974 1089 Pfam Cellulose synthase 361 1078 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco5g00974 1089 Coils Coil 705 725 - -
Phco5g00974 1089 SUPERFAMILY RING/U-box 27 107 - -
Phco5g00974 1089 SUPERFAMILY Nucleotide-diphospho-sugar transferases 374 871 IPR029044 -
Phco5g00974 1089 MobiDBLite consensus disorder prediction 238 263 - -
Phco5g00974 1089 FunFam Cellulose synthase 478 652 - -
Phco5g00974 1089 CDD mRING-HC-C4C4_CesA 37 87 - -
Phco5g00974 1089 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 507 656 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00974 Phco-Chr5 16734363 16743386 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00974 5 16734363 16743386 Phco5g00974 5 16734363 16743386 ECH
Phco5g00974 5 16734363 16743386 Phco6g02342 6 44622052 44627472 PCT