Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1553 ATGAAGATTTCTCATTACTACTGCATCACTAGTCTCCTGCTTCTGATTCTCTTCTGCTTTTCAGAGGGCTGGCGCGCTGATCCCACATATGGGTTCACTGTTGTGCCCTTGACAGAATGGAATTTTGAACTGCAAAAGCCATATGATGTGCCGCTGGAGGAGCGCTACAGCTATGAAAATGGAGTAAGGAAGCTGTGGGTGTATGCTGATGATAAGCCCCATGACCCTAACAGTCTCACTCAGCCACGGACCGAAGTCCGCATTCGGGGACTTGACTACTCATCTGGGGTTTGGCAGTTTGAAGGGTATGGCTTTGTGCCAAATGGAACCTCTGGTGTGACTGTCTCCCAGATACATGGTGCAGCTCAGGCCGCTACAACTTTGATTCTGAGGATCTACAATGGTGATATGAGGTACTATAGTGCTGATCTGATAGCCACTGGTATGTATGATAGGTGGTTCAGGCTTAATGTCATCCACGACGTCGATGGGGGGAAGGTGACAGTGTTCATCGATGGCGTTCAGAAATTTCAAGTGAAGGATAAAGGGCCAGGAGACTTGTATTTCAAGTGTGGAGTTTATGCTGCCCCGGGTAATATCAGCTACTGCATGGAATCAAGGTGGAGAGACATCAAGATTTACAAAAAGTAA 651 0.4731 MKISHYYCITSLLLLILFCFSEGWRADPTYGFTVVPLTEWNFELQKPYDVPLEERYSYENGVRKLWVYADDKPHDPNSLTQPRTEVRIRGLDYSSGVWQFEGYGFVPNGTSGVTVSQIHGAAQAATTLILRIYNGDMRYYSADLIATGMYDRWFRLNVIHDVDGGKVTVFIDGVQKFQVKDKGPGDLYFKCGVYAAPGNISYCMESRWRDIKIYKK* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1553 216 PANTHER BINDING PROTEIN, PUTATIVE, EXPRESSED-RELATED 13 216 - -
Vvi18g1553 216 Gene3D - 53 214 - -
Vvi18g1553 216 Pfam Alginate lyase 41 214 IPR014895 -
Vvi18g1553 216 SUPERFAMILY Concanavalin A-like lectins/glucanases 56 215 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1553 Vvi-Chr18 19625488 19626211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1553 - - vvi:100255451 459.529