Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03385 ATGGACACCAAAGGGAGACTAGTTGCAGGGTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAGACTGCAAGAGTGACTGCTGTCACAGAATTAAGTGGTCAAATTTGTCAGATCTGTGGGGATGAGTTAGAGGTTACAGTGAATGGGGAGCCATTTGTTGCTTGCAATGAATGTGCATTTCCTGTGTGCAAACCTTGCTATGAGTATGAAAGAAGAGAGGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGGTGAAGAAGATTCAACCAACTTTCACTCTGATCTATTTATGTCTATTTGGCTAACACTGCAACTGATTTCAGGTAGTGCTAGAGTTGAGGGTGATGAAGAAGAGGATGACACTGATGATTTGGAAAGCGAGTTTGATATTGGAGGCAATCTTAGGCGAGATCATCATCACATGGCAGAGTCCATGTTCTCTACACGCCTTAACTATGGTTCAGTCAATGGTTCAGTGATCCACACACCATCAGAGTTTGATGCAGCTTCTGTGGCTTCTGAGATCCCTCTTCTGACATATGGTCAAGAGGATGTTGGCATTTCTGCTGATAAACATGCACTTATTCTTCCACCATTCATGGCTCGAGGGAAACGGGTTCATCCTATGCCTTTTCCTGATTCATCTGTACCTGTTCAACCCAGACCTATGGATCCTAAAAAGGATATAGCAGTGTATGGTTATGGAAGTGTTGCATGGAAGGAAAGGATGGAGGATTGGAAGAAAAAGCAAAGTGAAAAACTTCAGGTGGTTAGGCATGAAGGGGGTAAAGACAGTGATGAGCTGGATGATCCTGACTTGCCAAAAATGGATGAAGGTAGACAACCACTTTGGAGAAAGCTGCCAATTAGTTCAAGCAGGATAAATCCATACAGAATCATAATAGTACTCCGGATTGCCATTCTTGGCCTCTTTTTCCATTATAGAATTCTCCATCCAGTCAATGATGCATATGCATTGTGGCTCACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTTGATCAGTTCCCAAAATGGAGCCCAATTCTGCGTGAAACATACCTTGATCGTTTATCTCTAAGGTATGAGAAAGAAGGAAAGCCATCTCAGTTAGCTGATATAGATGTGTTTGTCAGTACAGTTGATCCTATGAAAGAGCCTCCACTTATTACTGCAAACACAGTCCTGTCTATCCTTGCTGTTGATTATCCAGTGGAGAAGGTTGCATGCTATGTCTCAGATGATGGTGCTGCAATGCTTACATTTGAAGCACTCTCTGAGACTTCCGAGTTTGCAAGAAAATGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCACGGGCTCCAGAATGGTATTTTGCACAGAAGGTTGACTACTTGAAGGATAAAGTGGATGCAGCATTCATAAGAGAGCGTCGGGCCATTAAGAGGGAGTATGAAGAGTTCAAAGTGAGGATTAATGCATTAGTGGCAATGGCTCAAAAGGTTCCTGAGGATGGTTGGACCATGCAGGATGGTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCTGGAATGATACAAGTTTTCCTTGGTCAAAATGGTGTTCGTGACATTGAAGGAAATGAATTACCTCGACTTGTCTATGTGTCCCGTGAGAAAAGACCTGGATATGAGCACCACAAAAAAGCTGGAGCTATGAATGCTTTGGTGAGAGTCTCAGCAATAATCACAAATGCTCCTTACCTACTTAATGTTGATTGTGATCACTACATAAATAATAGTAAGGCTCTTCGTGAAGCCATGTGTTTTATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAGTTTCCCCAAAGATTTGATGGGATTGATCGTAATGATAGATACTCAAATCGCAATGTTGTATTCTTTGATATCAATATGAAAGGTTTGGATGGCATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTCCGGAGGCAGGCATTTTATGGATATGACGCCCCTGCTACGAAGAAACCACCAAGGAAGACATGTAACTGTTGGCCTAAATGGTGCTGCTGTCTGTGTTGTGGATCTAGTAAGAAAAAGATTAAAGCAAAGTCAAGCGTGAAAAGGAAGATTAAGAATAAAGATGATACAAAGCAAATGCATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATTGACAATGAGAAGTCCTCACTAATGTCTCACCAGAAGTTTGAGAAGAGATATGGGCAGTCATCTGTTTTCATAGCTTCAACACTCATGGAAGATGGGGGTATTCCAAAAGCAGCAAGTTCTGCAACACTCTTGAAAGAGGCCATCCATGTTATTAGTTGTGGTTATGAGGATAAGACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGCTCAGTTACAGAAGATATTTTAACAGGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTGTACTGCATGCCTAAAAGGCCTGCTTTCAAGGGTTCAGCTCCTATAAATCTATCAGATCGTCTGCATCAAGTTCTTCGGTGGGCGCTTGGATCTGTTGAGATCTTTTTCAGTAGGCATTGTCCTATATGGTATGGTTATGGTGGTGGCTTGAAGTCGCTGGAACGATTCTCTTACATAAACTCAGTTGTTTATCCTCTGACTTCAATTCCCTTAATTGCCTACTGTGCATTGCCAGCTGTTTGTCTGCTCACTGGGAAATTCATTGTCCCTGAGATAAGTAACTATGCCAGTATCATTTTCATGGCCCTATTCATCTCTATAGCTGCAACTGGAATCCTGGAAATGCAGTGGGGAGGTGTTGGTATACATGATTGGTGGAGGAATGAACAGTTCTGGGTTATTGGTGGTGCCTCCTCACATCTGTTTGCTCTCTTTCAGGGTTTGCTCAAAGTTCTGGCAGGAGTTAATACAAACTTCACTGTCACATCCAAAGCTGCAGATGATGGAGATTTTGCTGAACTCTACATCTTCAAGTGGACATCCTTGTTGATCCCTCCATTGACCCTACTAATCATAAACATAATTGGAGTCATTGTTGGTATCTCAGATGCTATAAACAATGGCTATGATTCATGGGGTCCTTTGTTTGGAAGGCTATTTTTTGCCCTTTGGGTCATTGTCCATCTCTACCCTTTCCTCAAGGGTGTCATGGGAAAACAGGAAGGTGTTCCTACCATCATATTAGTCTGGGCCATTCTTCTGGCTTCAATCTTAACACTACTTTGGGTGAGAATCAACCCATTTTTGGCCAAAAATGATATAGTGTTAGAAATTTGTGGATTGAAGTGTGACTAA 3345 0.4191 MDTKGRLVAGSHNRNEFVLINADETARVTAVTELSGQICQICGDELEVTVNGEPFVACNECAFPVCKPCYEYERREGNQVCPQCKTRYKRIKGEEDSTNFHSDLFMSIWLTLQLISGSARVEGDEEEDDTDDLESEFDIGGNLRRDHHHMAESMFSTRLNYGSVNGSVIHTPSEFDAASVASEIPLLTYGQEDVGISADKHALILPPFMARGKRVHPMPFPDSSVPVQPRPMDPKKDIAVYGYGSVAWKERMEDWKKKQSEKLQVVRHEGGKDSDELDDPDLPKMDEGRQPLWRKLPISSSRINPYRIIIVLRIAILGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWIFDQFPKWSPILRETYLDRLSLRYEKEGKPSQLADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAAFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAIITNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRNDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGYDAPATKKPPRKTCNCWPKWCCCLCCGSSKKKIKAKSSVKRKIKNKDDTKQMHALENIEEGIEGIDNEKSSLMSHQKFEKRYGQSSVFIASTLMEDGGIPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKSLERFSYINSVVYPLTSIPLIAYCALPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGDFAELYIFKWTSLLIPPLTLLIINIIGVIVGISDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASILTLLWVRINPFLAKNDIVLEICGLKCD 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03385 1114 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 290 1075 - -
Spst4g03385 1114 SUPERFAMILY Nucleotide-diphospho-sugar transferases 399 914 IPR029044 -
Spst4g03385 1114 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Spst4g03385 1114 CDD mRING-HC-C4C4_CesA 37 87 - -
Spst4g03385 1114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 136 IPR013083 -
Spst4g03385 1114 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 532 681 IPR029044 -
Spst4g03385 1114 Pfam Cellulose synthase 386 1103 IPR005150 GO:0016020|GO:0016760|GO:0030244
Spst4g03385 1114 SUPERFAMILY RING/U-box 27 103 - -
Spst4g03385 1114 MobiDBLite consensus disorder prediction 263 288 - -
Spst4g03385 1114 FunFam Cellulose synthase 503 677 - -
Spst4g03385 1114 Pfam Zinc-binding RING-finger 31 94 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03385 Spst-Chr4 74086048 74093710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03385 1 1113 Glycosyltransferase AT5G64740 76.254 0.0 1748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03385 K10999 - gmx:100795809 2034.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03385 4 74086048 74093710 Spst4g03385 4 74086048 74093710 ECH
Spst4g03385 4 74086048 74093710 Spst10g00842 10 8955183 8960581 PCT