Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1550 ATGGCCACCTCGCTCACTTTCTCTACAGTTCGTGCGTTGAATTCTCAACGCCCCACTCCTTTAGCCTTTTCTTCTTCCTCCCCTTCTTCCAAGCTCTTCTCATCGTCCCCCTTGCAGTTTCCTAGGCAGCTCCGCCCTATTCGAATCGGCAACAACGGAATTTCATCCCCGTCTAGGCCTCGAACCCTTCCTGTGGTTGAAGCAAAGAAGCAAACATTTTCTTCCTTGGATGAATTGCTAGCAAATTCTGAAAAACCTGTTCTGGTAGACTTCTATGCAACTTGGTGTGGCCCTTGTCAGTTCATGGTTCCTATCCTCAACGAAGTCGGTGCTTCTCTGAAAGACAAGATCCAGGTGGTGAAAATTGATACTGAGAAATACCCGAGCATTGCTGATAAGTACAGAATAGAGGCATTGCCTACTTTCATCATATTTAAAGATGGGAAGCCATATGATCGCTTTGAAGGTGCTTTGACTGCAGATCAGCTCATCCAGCGCATTGAGACCACACTAAAAGTGAAACAATAG 528 0.4602 MATSLTFSTVRALNSQRPTPLAFSSSSPSSKLFSSSPLQFPRQLRPIRIGNNGISSPSRPRTLPVVEAKKQTFSSLDELLANSEKPVLVDFYATWCGPCQFMVPILNEVGASLKDKIQVVKIDTEKYPSIADKYRIEALPTFIIFKDGKPYDRFEGALTADQLIQRIETTLKVKQ* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1550 175 ProSiteProfiles Thioredoxin domain profile. 52 172 IPR013766 -
Vvi18g1550 175 NCBIfam thioredoxin 73 169 IPR005746 GO:0015035
Vvi18g1550 175 FunFam Thioredoxin 64 171 - -
Vvi18g1550 175 Gene3D Glutaredoxin 56 174 - -
Vvi18g1550 175 PANTHER GEO12009P1 70 172 - -
Vvi18g1550 175 PRINTS Thioredoxin family signature 135 146 - -
Vvi18g1550 175 PRINTS Thioredoxin family signature 95 104 - -
Vvi18g1550 175 PRINTS Thioredoxin family signature 87 95 - -
Vvi18g1550 175 ProSitePatterns Thioredoxin family active site. 88 106 IPR017937 -
Vvi18g1550 175 Pfam Thioredoxin 72 168 IPR013766 -
Vvi18g1550 175 CDD TRX_family 74 168 - -
Vvi18g1550 175 SUPERFAMILY Thioredoxin-like 72 172 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1550 Vvi-Chr18 19593684 19596449 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1550 - - vvi:100245159 333.183