Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00846 ATGGGATTGAATATTTGTCCAAACCCCAAAGAATCATTAGAAGGTTTTGATTGCAAACCAAGGAAAGATCTTAGTCAAATGGGCGATGATGTGCTAGTGACAGTTGGAAATATATCTCAAGATGAACGGCCTGAATCAGCTTCTTCTAAGAAGGAAGATGATTGGAAGGAAAATTTGGAGCAGAAATCATCAGAAGTTAATTCTGCACCTGGAGTAGGTTTGGACCATTTCATCCCAGAGCCTGATGGAACTGAGAGGAACCTGCTTGTTGCTGACTATGCGACTATGTTTTCTAGATCAATGATGGAGAAATGGGGTTCTCCAAGGCAAGACCTAATATGGGACAGGCTATCAGAGTCTGAGAAGCAAAAGCTGATTAACCTAGCGAAGATACAAAATGATGGGACTATTGAAGTAAATCTAGAAAAAGATGCACCTCTTGCATCAGAATTGTTGGAGTTCCAATCATTTGAAGAGTCAACTGTAAGTGGAACTCTTATGTCTGAATCAAAAAAATCAGCTCCCTGGTTACAAATTGCCATACTTGTGGTTGGAACTAGAGGTGATGTACAACCTTTCCTGGCCATAGCAAAAAAGCTTCAGGAGCATGGTCATCATGTTAGGCTGGCAACTCATACTGATTTTGACGTGTTTGTAAAGTCTGCTGGTGTTGATTTCTATCCGTTGGGTGGTGATCCTCGTGCTTTGGCACGATATATGGTGAGGAATAAAGGTATAATCCCATCTGGTCCAACCGAAATATCTATCCAAAGAAAGCAGCTGAAGGCTATTGTTGATTCTCTTCTTCCAGCATGCATAGCACCTGATTTGGAAACTGGTGTTCCTTTTAGAGCTCAAGCTATTATTGCCAATCCTACTGCATGTGGACATACACACGTTGCCGAAGCCCTTGGGGTGCCCCTTCACATCTTCTTCACAATGCCTTGGACGCCAACATATGAGTTCCCACACCCTTTGGCACGTGTTCCTCAAAGTGCTGGTTATTGGCTGTCATATATAATTGTGGATCTGTTGATATGGTGGGGGATACGAGGAATTATCAATGACTTCCGGAAAAGAAAATTGAAGCTTGCTCCTGTTGCATACTTCAGTATGTACCATGGATCAATATCTCATTTACCGACTGGCTATATGTGGAGTTCCCATGTTGTTCCAAAACCAAGTGACTGGGGTCCTTTAGTTGACGTTGTTGGTTATTGCTTTTTGGACCTTGGATCAAAGTATCAACCACAGGAAGATTTTGTCCGATGGATTCAGAAAGGATCAAAACCTATATATTTTGGTTTTGGGAGTATGCCTCTTGATGATCCTAAAAGAACTACTGATATCATAATGGAGGCACTAAAGGATACAAAACAACGGGGAATTATTGACAAGGGCTGGGGAAATCTAGGGAACTTGGCAGAAGTTCCTGACAATGTTTTCCTGCTAGAGGAATGCCCTCATGACTGGCTGTTTCCTCAATGTTCTGCTTTGGTGCATCATGGTGGTGCTGGAACAACGGCTACAGGACTAAAGGCTGGGTGTCCAACAACCATCGTTCCATTCTTTGGAGATCAGTTCTTTTGGGGAGATAGAATATATCAGAAAGGGCTGGGACCAGCTCCAATTCCAATATCTCAGCTCAGTCTTGAGAGTTTATCCGATGCCATAAAATTCATGCTCCGGCTAGAGGTAACTACTAATTCTATGCAATATCCATCCCTACTAATCCCAAAATATGTTAATAGGCTTCGAATTTAA 1764 0.4218 MGLNICPNPKESLEGFDCKPRKDLSQMGDDVLVTVGNISQDERPESASSKKEDDWKENLEQKSSEVNSAPGVGLDHFIPEPDGTERNLLVADYATMFSRSMMEKWGSPRQDLIWDRLSESEKQKLINLAKIQNDGTIEVNLEKDAPLASELLEFQSFEESTVSGTLMSESKKSAPWLQIAILVVGTRGDVQPFLAIAKKLQEHGHHVRLATHTDFDVFVKSAGVDFYPLGGDPRALARYMVRNKGIIPSGPTEISIQRKQLKAIVDSLLPACIAPDLETGVPFRAQAIIANPTACGHTHVAEALGVPLHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYIIVDLLIWWGIRGIINDFRKRKLKLAPVAYFSMYHGSISHLPTGYMWSSHVVPKPSDWGPLVDVVGYCFLDLGSKYQPQEDFVRWIQKGSKPIYFGFGSMPLDDPKRTTDIIMEALKDTKQRGIIDKGWGNLGNLAEVPDNVFLLEECPHDWLFPQCSALVHHGGAGTTATGLKAGCPTTIVPFFGDQFFWGDRIYQKGLGPAPIPISQLSLESLSDAIKFMLRLEVTTNSMQYPSLLIPKYVNRLRI 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00846 587 MobiDBLite consensus disorder prediction 1 24 - -
Cca08g00846 587 CDD GT1_Gtf-like 179 562 IPR002213 GO:0008194
Cca08g00846 587 PANTHER STEROL 3-BETA-GLUCOSYLTRANSFERASE UGT80B1 37 573 - -
Cca08g00846 587 Pfam Glycosyltransferase family 28 N-terminal domain 179 322 IPR004276 GO:0005975|GO:0016758|GO:0030259
Cca08g00846 587 Gene3D Glycogen Phosphorylase B; 179 407 - -
Cca08g00846 587 PANTHER STEROL 3-BETA-GLUCOSYLTRANSFERASE 37 573 - -
Cca08g00846 587 MobiDBLite consensus disorder prediction 61 80 - -
Cca08g00846 587 Gene3D Glycogen Phosphorylase B; 408 568 - -
Cca08g00846 587 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 179 565 - -
Cca08g00846 587 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 425 572 IPR002213 GO:0008194
Cca08g00846 587 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00846 Cca-Chr8 18666864 18678647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00846 200 577 Glycosyltransferase AT1G43620 79.420 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00846 K05841 - gmx:100797391 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00846 08 18666864 18678647 Cca08g00846 08 18666864 18678647 ECH
Cca08g00846 08 18666864 18678647 Cca02g02160 02 41915197 41933238 PCT